JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NPRL2_chr3_50342330_50355775	0/0	t0002	401	66	0	10	55	0	1	copy fasta	NPRL2	chr3	50342330	50355775
NPRL2_chr3_50342330_50355775	0/1	t0003	399	48	9	9	18	6	5	copy fasta	NPRL2	chr3	50342330	50355775
NPRL2_chr3_50342330_50355775	0/0	t0004	401	47	16	9	15	3	4	copy fasta	NPRL2	chr3	50342330	50355775
NPRL2_chr3_50342330_50355775	0/0	t0005	402	13	0	4	9	0	0	copy fasta	NPRL2	chr3	50342330	50355775
NPRL2_chr3_50342330_50355775	0/0	t0006	399	11	8	2	1	0	0	copy fasta	NPRL2	chr3	50342330	50355775
NPRL2_chr3_50342330_50355775	0/0	t0007	402	7	3	2	0	0	2	copy fasta	NPRL2	chr3	50342330	50355775
NPRL2_chr3_50342330_50355775	0/0	t0008	400	7	0	2	5	0	0	copy fasta	NPRL2	chr3	50342330	50355775
NPRL2_chr3_50342330_50355775	0/0	t0009	398	6	6	0	0	0	0	copy fasta	NPRL2	chr3	50342330	50355775
NPRL2_chr3_50342330_50355775	0/0	t0010	403	5	4	0	0	0	1	copy fasta	NPRL2	chr3	50342330	50355775
NPRL2_chr3_50342330_50355775	0/0	t0011	399	4	0	0	4	0	0	copy fasta	NPRL2	chr3	50342330	50355775
NPRL2_chr3_50342330_50355775	0/0	t0012	390	1	0	0	0	0	1	copy fasta	NPRL2	chr3	50342330	50355775
NPRL3_chr16_80386_143673	0/1	t0001	1389	114	17	26	53	3	14	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	t0002	1419	113	49	19	25	3	17	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	1/0	t0003	1419	58	3	5	42	4	3	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	t0004	1419	20	1	3	15	0	1	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	t0005	1389	10	0	4	4	0	2	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	t0006	1419	6	0	0	6	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	t0007	1419	5	5	0	0	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	t0008	1419	3	2	1	0	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	t0009	1387	3	2	0	0	0	1	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	t0010	1419	2	0	0	2	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	t0011	1717	2	0	2	0	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	t0012	1389	2	1	1	0	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	t0013	1389	2	2	0	0	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	t0014	1451	1	1	0	0	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	t0015	1747	1	0	0	0	0	1	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	t0016	1419	1	1	0	0	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	t0017	1419	1	0	0	0	0	1	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	t0018	1389	1	1	0	0	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	t0019	1389	1	0	0	1	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	t0020	1389	1	0	1	0	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	t0021	1389	1	1	0	0	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	t0022	1387	1	1	0	0	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	t0023	1389	1	1	0	0	0	0	copy fasta	NPRL3	chr16	80386	143673
NPSR1_chr7_34653218_34854978	0/0	t0001	519	76	4	16	40	6	10	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	t0002	519	61	36	12	8	2	3	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	t0003	519	52	23	8	12	1	8	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	t0004	519	36	6	6	21	0	3	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	t0005	519	13	8	2	1	2	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	1/1	t0006	519	9	3	0	4	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	t0007	519	9	0	4	2	1	2	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	t0008	519	1	1	0	0	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	t0009	519	1	0	0	1	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	t0010	519	1	1	0	0	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	t0011	519	1	0	0	1	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPS_chr10_127544309_127558540	0/1	t0001	962	128	44	17	47	2	17	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	0/0	t0002	962	104	11	10	76	2	5	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	0/0	t0003	962	77	0	9	62	0	6	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	0/0	t0004	963	43	2	17	17	3	4	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	0/0	t0005	962	24	9	6	1	2	6	copy fasta	NPS	chr10	127544309	127558540