JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NPS_chr10_127544309_127558540	0/0	t0006	962	18	0	1	12	2	3	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	0/0	t0007	962	14	0	10	4	0	0	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	0/0	t0008	961	12	11	1	0	0	0	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	0/0	t0009	961	11	10	1	0	0	0	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	0/0	t0010	962	5	1	1	0	1	2	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	1/0	t0011	962	5	4	0	0	0	0	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	0/0	t0012	962	5	0	1	0	2	2	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	0/0	t0013	961	3	3	0	0	0	0	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	0/0	t0014	961	2	0	2	0	0	0	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	0/0	t0015	962	2	2	0	0	0	0	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	0/0	t0016	962	1	1	0	0	0	0	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	0/0	t0017	962	1	0	0	1	0	0	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	0/0	t0018	962	1	0	0	1	0	0	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	0/0	t0019	962	1	0	0	1	0	0	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	0/0	t0020	962	1	0	0	1	0	0	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	0/0	t0021	962	1	0	1	0	0	0	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	0/0	t0022	962	1	1	0	0	0	0	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	0/0	t0023	962	1	1	0	0	0	0	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	0/0	t0024	962	1	0	0	1	0	0	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	0/0	t0025	962	1	0	0	0	0	1	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	0/0	t0026	962	1	0	1	0	0	0	copy fasta	NPS	chr10	127544309	127558540
NPTN_chr15_73555014_73638389	1/1	t0001	1224	321	76	57	146	6	34	copy fasta	NPTN	chr15	73555014	73638389
NPTN_chr15_73555014_73638389	0/0	t0002	1224	15	0	0	13	2	0	copy fasta	NPTN	chr15	73555014	73638389
NPTN_chr15_73555014_73638389	0/0	t0003	1224	3	0	0	3	0	0	copy fasta	NPTN	chr15	73555014	73638389
NPTN_chr15_73555014_73638389	0/0	t0004	1224	1	1	0	0	0	0	copy fasta	NPTN	chr15	73555014	73638389
NPTN_chr15_73555014_73638389	0/0	t0005	1224	1	1	0	0	0	0	copy fasta	NPTN	chr15	73555014	73638389
NPTN_chr15_73555014_73638389	0/0	t0006	1224	1	0	1	0	0	0	copy fasta	NPTN	chr15	73555014	73638389
NPTX1_chr17_80461834_80481607	0/1	t0001	4143	91	6	17	54	4	9	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0002	4141	47	0	1	44	1	1	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	1/0	t0003	4141	38	4	9	23	0	1	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0004	4143	31	1	8	10	5	7	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0005	4142	14	3	5	0	3	3	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0006	4143	13	5	7	0	0	1	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0007	4143	12	1	0	10	1	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0008	4142	12	0	2	8	1	1	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0009	4144	10	9	1	0	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0010	4140	7	7	0	0	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0011	4141	7	0	0	7	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0012	4144	7	0	0	6	0	1	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0013	4143	6	4	2	0	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0014	4143	6	0	4	0	1	1	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0015	4142	5	0	0	5	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0016	4143	5	0	3	0	0	2	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0017	4142	4	3	1	0	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0018	4140	4	0	0	3	0	1	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0019	4142	4	0	0	3	0	1	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0020	4142	4	0	1	3	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0021	4143	4	4	0	0	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0022	4141	4	2	0	0	0	2	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0023	4143	4	4	0	0	0	0	copy fasta	NPTX1	chr17	80461834	80481607