JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NPTX1_chr17_80461834_80481607	0/0	t0074	4142	1	0	0	0	1	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0075	4143	1	0	0	0	0	1	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0076	4141	1	0	0	1	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0077	4142	1	0	1	0	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0078	4144	1	0	0	1	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0079	4143	1	0	0	1	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0080	4131	1	0	0	0	0	1	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0081	4142	1	0	0	1	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0082	4143	1	0	1	0	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0083	4143	1	0	1	0	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0084	4143	1	0	0	1	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0085	4141	1	0	0	1	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0086	4143	1	0	1	0	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0087	4144	1	0	0	1	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0088	4143	1	0	1	0	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0089	4143	1	0	0	1	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0090	4140	1	0	0	0	0	1	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0091	4143	1	0	0	1	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0092	4143	1	0	0	1	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0093	4142	1	0	0	0	0	1	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	t0094	4144	1	0	0	1	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX2_chr7_98612285_98634869	1/0	t0001	1418	244	43	49	105	16	30	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/1	t0002	1418	77	21	7	43	1	4	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	t0003	1418	32	0	3	28	0	1	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	t0004	1417	8	3	0	0	0	5	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	t0005	1418	7	7	0	0	0	0	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	t0006	1418	6	6	0	0	0	0	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	t0007	1418	4	4	0	0	0	0	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	t0008	1419	4	0	1	3	0	0	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	t0009	1417	3	3	0	0	0	0	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	t0010	1419	3	2	0	1	0	0	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	t0011	1418	2	2	0	0	0	0	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	t0012	1418	2	2	0	0	0	0	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	t0013	1418	2	2	0	0	0	0	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	t0014	1418	2	0	1	1	0	0	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	t0015	1418	2	0	0	2	0	0	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	t0016	1418	2	0	1	0	1	0	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	t0017	1418	1	1	0	0	0	0	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	t0018	1418	1	0	0	1	0	0	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	t0019	1419	1	0	0	0	0	1	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	t0020	1418	1	0	1	0	0	0	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	t0021	1417	1	1	0	0	0	0	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	t0022	1417	1	0	0	1	0	0	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	t0023	1418	1	0	0	0	0	1	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	t0024	1418	1	0	0	1	0	0	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	t0025	1418	1	0	1	0	0	0	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	t0026	1418	1	0	0	0	0	1	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	t0027	1418	1	0	0	0	0	1	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	t0028	1417	1	1	0	0	0	0	copy fasta	NPTX2	chr7	98612285	98634869
NPTXR_chr22_38813452_38849028	0/0	t0001	4326	126	24	22	60	5	15	copy fasta	NPTXR	chr22	38813452	38849028