Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARNT_chr1_150804713_150881599	0/0	t0026	2344	2	0	0	2	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0027	2344	2	0	0	0	0	2	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0028	2344	2	0	2	0	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0029	2344	1	0	0	1	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0030	2342	1	0	0	0	0	1	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0031	2346	1	0	0	0	0	1	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0032	2346	1	0	0	0	0	1	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0033	2348	1	1	0	0	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0034	2346	1	1	0	0	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0035	2350	1	1	0	0	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0036	2345	1	1	0	0	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0037	2347	1	1	0	0	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0038	2344	1	1	0	0	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0039	2345	1	0	0	0	0	1	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0040	2344	1	1	0	0	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0041	2349	1	1	0	0	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0042	2344	1	1	0	0	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0043	2346	1	1	0	0	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0044	2348	1	0	1	0	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0045	2347	1	0	0	0	0	1	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0046	2344	1	0	0	0	1	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0047	2345	1	1	0	0	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0048	2348	1	0	0	1	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0049	2344	1	0	0	1	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0050	2344	1	0	0	1	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0051	2345	1	0	0	0	1	0	copy fasta	ARNT	chr1	150804713	150881599
ARPC1A_chr7_99320898_99371262	1/1	t0001	470	316	88	40	134	12	40	copy fasta	ARPC1A	chr7	99320898	99371262
ARPC1B_chr7_99369730_99399816	1/1	t0001	393	130	5	22	73	9	19	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	t0002	395	76	4	4	52	1	15	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	t0003	400	23	14	1	1	3	4	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	t0004	395	21	16	5	0	0	0	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	t0005	394	12	3	2	5	2	0	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	t0006	392	12	6	1	4	1	0	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	t0007	394	12	0	3	6	0	3	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	t0008	396	7	2	1	3	0	1	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	t0009	401	6	6	0	0	0	0	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	t0010	397	6	6	0	0	0	0	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	t0011	393	5	5	0	0	0	0	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	t0012	396	4	4	0	0	0	0	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	t0013	395	4	4	0	0	0	0	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	t0014	394	4	4	0	0	0	0	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	t0015	392	3	1	0	2	0	0	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	t0016	398	3	3	0	0	0	0	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	t0017	395	2	0	1	1	0	0	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	t0018	391	2	0	0	2	0	0	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	t0019	396	2	2	0	0	0	0	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	t0020	395	1	0	0	0	0	1	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	t0021	396	1	0	0	1	0	0	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	t0022	396	1	0	0	1	0	0	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	t0023	395	1	0	0	1	0	0	copy fasta	ARPC1B	chr7	99369730	99399816