JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NPTXR_chr22_38813452_38849028	0/0	t0002	4328	48	4	20	15	3	6	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0003	4326	41	13	14	6	3	5	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0004	4327	33	14	3	12	0	4	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0005	4329	16	1	9	1	1	4	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0006	4327	9	6	0	3	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0007	4326	8	0	0	5	0	3	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0008	4328	8	0	0	7	0	1	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0009	4329	5	0	0	5	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0010	4326	4	0	3	0	1	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0011	4326	3	0	0	3	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0012	4327	3	3	0	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0013	4327	3	3	0	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0014	4328	3	2	1	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0015	4326	3	2	1	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0016	4326	2	0	0	2	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0017	4327	2	1	1	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0018	4327	2	2	0	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	1/0	t0019	4328	2	0	0	0	1	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0020	4328	2	1	0	1	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0021	4326	2	2	0	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0022	4335	2	0	0	2	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0023	4327	2	2	0	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0024	4314	1	0	0	1	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0025	4326	1	1	0	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0026	4327	1	0	1	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0027	4326	1	0	0	1	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0028	4326	1	1	0	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/1	t0029	4326	1	0	0	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0030	4326	1	1	0	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0031	4326	1	1	0	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0032	4326	1	1	0	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0033	4326	1	1	0	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0034	4327	1	0	0	1	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0035	4327	1	1	0	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0036	4327	1	0	1	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0037	4327	1	1	0	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0038	4328	1	0	0	1	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0039	4328	1	0	0	1	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0040	4326	1	0	0	1	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0041	4328	1	0	0	0	0	1	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0042	4327	1	0	0	1	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0043	4328	1	1	0	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0044	4333	1	1	0	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0045	4334	1	0	0	1	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0046	4329	1	0	0	0	0	1	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0047	4326	1	1	0	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	t0048	4328	1	1	0	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPVF_chr7_25219570_25233486	0/1	t0001	600	143	7	18	97	4	16	copy fasta	NPVF	chr7	25219570	25233486
NPVF_chr7_25219570_25233486	1/0	t0002	600	127	30	33	36	11	16	copy fasta	NPVF	chr7	25219570	25233486
NPVF_chr7_25219570_25233486	0/0	t0003	600	64	14	9	31	1	9	copy fasta	NPVF	chr7	25219570	25233486