JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NPVF_chr7_25219570_25233486	0/0	t0004	600	60	12	3	42	0	3	copy fasta	NPVF	chr7	25219570	25233486
NPVF_chr7_25219570_25233486	0/0	t0005	600	31	16	13	0	0	2	copy fasta	NPVF	chr7	25219570	25233486
NPVF_chr7_25219570_25233486	0/0	t0006	600	7	0	2	5	0	0	copy fasta	NPVF	chr7	25219570	25233486
NPVF_chr7_25219570_25233486	0/0	t0007	600	6	5	1	0	0	0	copy fasta	NPVF	chr7	25219570	25233486
NPVF_chr7_25219570_25233486	0/0	t0008	600	4	4	0	0	0	0	copy fasta	NPVF	chr7	25219570	25233486
NPVF_chr7_25219570_25233486	0/0	t0009	600	3	3	0	0	0	0	copy fasta	NPVF	chr7	25219570	25233486
NPVF_chr7_25219570_25233486	0/0	t0010	600	1	1	0	0	0	0	copy fasta	NPVF	chr7	25219570	25233486
NPVF_chr7_25219570_25233486	0/0	t0011	600	1	0	1	0	0	0	copy fasta	NPVF	chr7	25219570	25233486
NPVF_chr7_25219570_25233486	0/0	t0012	600	1	0	0	1	0	0	copy fasta	NPVF	chr7	25219570	25233486
NPVF_chr7_25219570_25233486	0/0	t0013	600	1	1	0	0	0	0	copy fasta	NPVF	chr7	25219570	25233486
NPVF_chr7_25219570_25233486	0/0	t0014	600	1	1	0	0	0	0	copy fasta	NPVF	chr7	25219570	25233486
NPW_chr16_2014785_2025755	1/1	t0001	254	410	96	82	170	16	44	copy fasta	NPW	chr16	2014785	2025755
NPW_chr16_2014785_2025755	0/0	t0002	254	2	2	0	0	0	0	copy fasta	NPW	chr16	2014785	2025755
NPY1R_chr4_163318962_163337596	0/1	t0001	1607	195	23	53	85	10	23	copy fasta	NPY1R	chr4	163318962	163337596
NPY1R_chr4_163318962_163337596	0/0	t0002	1606	70	10	1	55	0	4	copy fasta	NPY1R	chr4	163318962	163337596
NPY1R_chr4_163318962_163337596	0/0	t0003	1606	64	8	10	38	5	3	copy fasta	NPY1R	chr4	163318962	163337596
NPY1R_chr4_163318962_163337596	1/0	t0004	1608	27	18	3	0	0	5	copy fasta	NPY1R	chr4	163318962	163337596
NPY1R_chr4_163318962_163337596	0/0	t0005	1607	13	0	5	5	0	3	copy fasta	NPY1R	chr4	163318962	163337596
NPY1R_chr4_163318962_163337596	0/0	t0006	1606	11	9	1	1	0	0	copy fasta	NPY1R	chr4	163318962	163337596
NPY1R_chr4_163318962_163337596	0/0	t0007	1607	9	7	1	0	1	0	copy fasta	NPY1R	chr4	163318962	163337596
NPY1R_chr4_163318962_163337596	0/0	t0008	1606	7	7	0	0	0	0	copy fasta	NPY1R	chr4	163318962	163337596
NPY1R_chr4_163318962_163337596	0/0	t0009	1608	4	4	0	0	0	0	copy fasta	NPY1R	chr4	163318962	163337596
NPY1R_chr4_163318962_163337596	0/0	t0010	1608	3	3	0	0	0	0	copy fasta	NPY1R	chr4	163318962	163337596
NPY1R_chr4_163318962_163337596	0/0	t0011	1607	3	1	0	2	0	0	copy fasta	NPY1R	chr4	163318962	163337596
NPY1R_chr4_163318962_163337596	0/0	t0012	1608	2	0	0	2	0	0	copy fasta	NPY1R	chr4	163318962	163337596
NPY1R_chr4_163318962_163337596	0/0	t0013	1606	2	0	0	2	0	0	copy fasta	NPY1R	chr4	163318962	163337596
NPY1R_chr4_163318962_163337596	0/0	t0014	1608	2	2	0	0	0	0	copy fasta	NPY1R	chr4	163318962	163337596
NPY1R_chr4_163318962_163337596	0/0	t0015	1606	1	0	0	1	0	0	copy fasta	NPY1R	chr4	163318962	163337596
NPY1R_chr4_163318962_163337596	0/0	t0016	1606	1	0	0	0	0	1	copy fasta	NPY1R	chr4	163318962	163337596
NPY1R_chr4_163318962_163337596	0/0	t0017	1606	1	1	0	0	0	0	copy fasta	NPY1R	chr4	163318962	163337596
NPY1R_chr4_163318962_163337596	0/0	t0018	1607	1	0	0	1	0	0	copy fasta	NPY1R	chr4	163318962	163337596
NPY1R_chr4_163318962_163337596	0/0	t0019	1607	1	0	0	0	0	1	copy fasta	NPY1R	chr4	163318962	163337596
NPY1R_chr4_163318962_163337596	0/0	t0020	1607	1	1	0	0	0	0	copy fasta	NPY1R	chr4	163318962	163337596
NPY2R_chr4_155203636_155222076	1/1	t0001	2474	426	67	83	211	18	45	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	0/0	t0002	2474	11	11	0	0	0	0	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	0/0	t0003	2476	7	7	0	0	0	0	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	0/0	t0004	2474	5	0	0	5	0	0	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	0/0	t0005	2474	5	5	0	0	0	0	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	0/0	t0006	2474	3	0	3	0	0	0	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	0/0	t0007	2474	2	2	0	0	0	0	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	0/0	t0008	2474	2	0	0	2	0	0	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	0/0	t0009	2474	1	0	0	1	0	0	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	0/0	t0010	2474	1	1	0	0	0	0	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	0/0	t0011	2474	1	0	0	0	0	1	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	0/0	t0012	2474	1	0	0	1	0	0	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	0/0	t0013	2474	1	1	0	0	0	0	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	0/0	t0014	2476	1	1	0	0	0	0	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	0/0	t0015	2476	1	1	0	0	0	0	copy fasta	NPY2R	chr4	155203636	155222076
NPY4R2_chr10_47913662_47928524	0/0	t0001	906	153	52	29	47	6	19	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	t0002	906	82	3	3	73	2	1	copy fasta	NPY4R2	chr10	47913662	47928524