JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NPY4R2_chr10_47913662_47928524	0/0	t0003	906	22	0	0	21	0	1	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	t0004	906	8	0	4	1	2	1	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	t0005	906	6	5	1	0	0	0	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	t0006	794	1	0	0	1	0	0	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	t0007	906	1	1	0	0	0	0	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	t0008	906	1	0	1	0	0	0	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	t0009	906	1	1	0	0	0	0	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	t0010	906	1	0	0	1	0	0	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R_chr10_46456099_46470958	0/0	t0001	906	215	21	41	133	4	16	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	t0002	906	30	10	7	7	0	6	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	t0003	906	13	11	2	0	0	0	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	t0004	906	10	6	4	0	0	0	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	t0005	906	4	0	0	4	0	0	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	t0006	906	4	0	0	3	0	1	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	t0007	906	4	0	0	4	0	0	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	t0008	906	3	3	0	0	0	0	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	t0009	906	2	2	0	0	0	0	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	t0010	906	1	0	0	1	0	0	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	t0011	906	1	0	0	0	0	1	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	t0012	891	1	1	0	0	0	0	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	t0013	906	1	1	0	0	0	0	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	t0014	906	1	1	0	0	0	0	copy fasta	NPY4R	chr10	46456099	46470958
NPY5R_chr4_163338892_163356934	1/1	t0001	553	358	82	63	168	11	32	copy fasta	NPY5R	chr4	163338892	163356934
NPY5R_chr4_163338892_163356934	0/0	t0002	553	68	9	5	45	1	8	copy fasta	NPY5R	chr4	163338892	163356934
NPY5R_chr4_163338892_163356934	0/0	t0003	553	7	0	0	7	0	0	copy fasta	NPY5R	chr4	163338892	163356934
NPY5R_chr4_163338892_163356934	0/0	t0004	553	3	0	2	0	0	1	copy fasta	NPY5R	chr4	163338892	163356934
NPY5R_chr4_163338892_163356934	0/0	t0005	553	3	3	0	0	0	0	copy fasta	NPY5R	chr4	163338892	163356934
NPY5R_chr4_163338892_163356934	0/0	t0006	553	1	0	0	0	0	1	copy fasta	NPY5R	chr4	163338892	163356934
NPY_chr7_24279190_24296862	1/1	t0001	262	467	84	83	234	14	50	copy fasta	NPY	chr7	24279190	24296862
NPY_chr7_24279190_24296862	0/0	t0002	262	7	6	1	0	0	0	copy fasta	NPY	chr7	24279190	24296862
NPY_chr7_24279190_24296862	0/0	t0003	245	1	1	0	0	0	0	copy fasta	NPY	chr7	24279190	24296862
NPY_chr7_24279190_24296862	0/0	t0004	262	1	1	0	0	0	0	copy fasta	NPY	chr7	24279190	24296862
NQO1_chr16_69704401_69731560	0/1	t0001	1697	304	68	64	121	16	34	copy fasta	NQO1	chr16	69704401	69731560
NQO1_chr16_69704401_69731560	1/0	t0002	1697	90	7	4	74	0	4	copy fasta	NQO1	chr16	69704401	69731560
NQO1_chr16_69704401_69731560	0/0	t0003	1694	25	7	6	5	2	5	copy fasta	NQO1	chr16	69704401	69731560
NQO1_chr16_69704401_69731560	0/0	t0004	1697	9	8	1	0	0	0	copy fasta	NQO1	chr16	69704401	69731560
NQO1_chr16_69704401_69731560	0/0	t0005	1697	4	0	0	4	0	0	copy fasta	NQO1	chr16	69704401	69731560
NQO1_chr16_69704401_69731560	0/0	t0006	1697	3	3	0	0	0	0	copy fasta	NQO1	chr16	69704401	69731560
NQO1_chr16_69704401_69731560	0/0	t0007	1697	2	2	0	0	0	0	copy fasta	NQO1	chr16	69704401	69731560
NQO1_chr16_69704401_69731560	0/0	t0008	1697	1	0	1	0	0	0	copy fasta	NQO1	chr16	69704401	69731560
NQO1_chr16_69704401_69731560	0/0	t0009	1697	1	0	0	0	0	1	copy fasta	NQO1	chr16	69704401	69731560
NQO1_chr16_69704401_69731560	0/0	t0010	1694	1	0	0	1	0	0	copy fasta	NQO1	chr16	69704401	69731560
NQO1_chr16_69704401_69731560	0/0	t0011	1697	1	0	0	1	0	0	copy fasta	NQO1	chr16	69704401	69731560
NQO1_chr16_69704401_69731560	0/0	t0012	1697	1	1	0	0	0	0	copy fasta	NQO1	chr16	69704401	69731560
NQO1_chr16_69704401_69731560	0/0	t0013	1697	1	0	0	1	0	0	copy fasta	NQO1	chr16	69704401	69731560
NQO1_chr16_69704401_69731560	0/0	t0014	1697	1	0	0	1	0	0	copy fasta	NQO1	chr16	69704401	69731560
NQO2_chr6_2994894_3024755	1/1	t0001	378	276	53	47	138	10	26	copy fasta	NQO2	chr6	2994894	3024755
NQO2_chr6_2994894_3024755	0/0	t0002	378	101	24	13	53	2	9	copy fasta	NQO2	chr6	2994894	3024755
NQO2_chr6_2994894_3024755	0/0	t0003	378	40	3	9	19	2	7	copy fasta	NQO2	chr6	2994894	3024755
NQO2_chr6_2994894_3024755	0/0	t0004	378	27	12	11	2	2	0	copy fasta	NQO2	chr6	2994894	3024755