JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NQO2_chr6_2994894_3024755	0/0	t0005	378	2	2	0	0	0	0	copy fasta	NQO2	chr6	2994894	3024755
NR0B1_chrX_30299206_30314390	1/1	t0001	401	307	68	62	138	12	25	copy fasta	NR0B1	chrX	30299206	30314390
NR0B1_chrX_30299206_30314390	0/0	t0002	400	7	6	0	0	1	0	copy fasta	NR0B1	chrX	30299206	30314390
NR0B1_chrX_30299206_30314390	0/0	t0003	401	5	0	0	2	0	3	copy fasta	NR0B1	chrX	30299206	30314390
NR0B1_chrX_30299206_30314390	0/0	t0004	402	1	0	0	1	0	0	copy fasta	NR0B1	chrX	30299206	30314390
NR0B1_chrX_30299206_30314390	0/0	t0005	402	1	0	1	0	0	0	copy fasta	NR0B1	chrX	30299206	30314390
NR0B1_chrX_30299206_30314390	0/0	t0006	402	1	0	0	1	0	0	copy fasta	NR0B1	chrX	30299206	30314390
NR0B2_chr1_26906489_26918975	1/0	t0001	392	187	33	25	101	5	22	copy fasta	NR0B2	chr1	26906489	26918975
NR0B2_chr1_26906489_26918975	0/1	t0002	392	105	43	27	7	9	18	copy fasta	NR0B2	chr1	26906489	26918975
NR0B2_chr1_26906489_26918975	0/0	t0003	392	15	6	6	0	1	2	copy fasta	NR0B2	chr1	26906489	26918975
NR0B2_chr1_26906489_26918975	0/0	t0004	392	4	0	4	0	0	0	copy fasta	NR0B2	chr1	26906489	26918975
NR0B2_chr1_26906489_26918975	0/0	t0005	392	3	3	0	0	0	0	copy fasta	NR0B2	chr1	26906489	26918975
NR0B2_chr1_26906489_26918975	0/0	t0006	392	1	0	0	0	1	0	copy fasta	NR0B2	chr1	26906489	26918975
NR0B2_chr1_26906489_26918975	0/0	t0007	392	1	1	0	0	0	0	copy fasta	NR0B2	chr1	26906489	26918975
NR1D1_chr17_40087793_40105589	1/1	t0001	786	256	66	51	86	11	40	copy fasta	NR1D1	chr17	40087793	40105589
NR1D1_chr17_40087793_40105589	0/0	t0002	786	164	30	21	102	3	8	copy fasta	NR1D1	chr17	40087793	40105589
NR1D1_chr17_40087793_40105589	0/0	t0003	786	3	0	0	3	0	0	copy fasta	NR1D1	chr17	40087793	40105589
NR1D1_chr17_40087793_40105589	0/0	t0004	786	2	2	0	0	0	0	copy fasta	NR1D1	chr17	40087793	40105589
NR1D1_chr17_40087793_40105589	0/0	t0005	786	1	0	0	0	1	0	copy fasta	NR1D1	chr17	40087793	40105589
NR1D1_chr17_40087793_40105589	0/0	t0006	786	1	0	1	0	0	0	copy fasta	NR1D1	chr17	40087793	40105589
NR1D1_chr17_40087793_40105589	0/0	t0007	786	1	0	1	0	0	0	copy fasta	NR1D1	chr17	40087793	40105589
NR1D1_chr17_40087793_40105589	0/0	t0008	786	1	0	0	0	1	0	copy fasta	NR1D1	chr17	40087793	40105589
NR1D1_chr17_40087793_40105589	0/0	t0009	786	1	0	0	1	0	0	copy fasta	NR1D1	chr17	40087793	40105589
NR1D2_chr3_23940286_23985617	1/1	t0001	3492	85	7	16	50	5	5	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0002	3495	80	8	19	36	4	13	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0003	3491	54	13	19	15	2	5	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0004	3492	48	3	1	40	0	4	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0005	3494	30	16	7	0	0	7	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0006	3490	11	10	1	0	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0007	3492	10	7	2	0	0	1	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0008	3495	9	0	8	1	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0009	3492	7	5	0	1	0	1	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0010	3490	6	0	0	0	0	6	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0011	3492	4	0	0	4	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0012	3494	4	0	3	0	0	1	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0013	3497	3	3	0	0	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0014	3490	3	0	0	3	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0015	3495	2	2	0	0	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0016	3495	2	0	2	0	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0017	3491	2	2	0	0	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0018	3486	2	2	0	0	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0019	3491	2	2	0	0	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0020	3491	1	1	0	0	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0021	3492	1	0	1	0	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0022	3492	1	0	0	1	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0023	3486	1	1	0	0	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0024	3443	1	0	0	1	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0025	3495	1	0	1	0	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0026	3495	1	0	0	1	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0027	3494	1	0	0	1	0	0	copy fasta	NR1D2	chr3	23940286	23985617