JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NR1D2_chr3_23940286_23985617	0/0	t0028	3497	1	0	0	0	0	1	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0029	3491	1	0	0	1	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0030	3490	1	1	0	0	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0031	3491	1	0	0	1	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0032	3492	1	0	0	1	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0033	3492	1	0	0	0	1	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0034	3492	1	1	0	0	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	t0035	3490	1	0	0	1	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1H2_chr19_50371457_50388388	0/1	t0001	1035	276	70	67	84	15	39	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	t0002	1035	65	12	3	42	0	8	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	t0003	1035	7	7	0	0	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	t0004	1035	6	6	0	0	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	t0005	1035	4	0	0	4	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	t0006	1035	4	0	0	4	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	t0007	1035	1	1	0	0	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	t0008	1035	1	0	0	1	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	t0009	1035	1	0	1	0	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	t0010	1035	1	1	0	0	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	t0011	1035	1	0	0	1	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	t0012	1035	1	1	0	0	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	1/0	t0013	1034	1	0	0	0	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	t0014	1035	1	0	0	0	1	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	t0015	1035	1	0	0	1	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	t0016	1035	1	0	0	0	0	1	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	t0017	1035	1	0	1	0	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	t0018	1035	1	0	0	1	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H3_chr11_47252996_47274033	1/0	t0001	509	344	93	63	135	15	37	copy fasta	NR1H3	chr11	47252996	47274033
NR1H3_chr11_47252996_47274033	0/1	t0002	509	20	1	13	0	1	4	copy fasta	NR1H3	chr11	47252996	47274033
NR1H3_chr11_47252996_47274033	0/0	t0003	509	2	0	0	2	0	0	copy fasta	NR1H3	chr11	47252996	47274033
NR1H3_chr11_47252996_47274033	0/0	t0004	509	1	0	0	0	0	1	copy fasta	NR1H3	chr11	47252996	47274033
NR1H3_chr11_47252996_47274033	0/0	t0005	509	1	0	0	1	0	0	copy fasta	NR1H3	chr11	47252996	47274033
NR1H4_chr12_100468866_100569414	1/1	t0001	1309	250	72	38	98	11	29	copy fasta	NR1H4	chr12	100468866	100569414
NR1H4_chr12_100468866_100569414	0/0	t0002	1309	47	2	0	41	0	4	copy fasta	NR1H4	chr12	100468866	100569414
NR1H4_chr12_100468866_100569414	0/0	t0003	1309	6	0	4	0	1	1	copy fasta	NR1H4	chr12	100468866	100569414
NR1H4_chr12_100468866_100569414	0/0	t0004	1309	3	3	0	0	0	0	copy fasta	NR1H4	chr12	100468866	100569414
NR1H4_chr12_100468866_100569414	0/0	t0005	1309	1	0	0	1	0	0	copy fasta	NR1H4	chr12	100468866	100569414
NR1H4_chr12_100468866_100569414	0/0	t0006	1309	1	1	0	0	0	0	copy fasta	NR1H4	chr12	100468866	100569414
NR1I2_chr3_119777101_119823487	0/1	t0001	1498	120	2	23	74	6	14	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	t0002	1498	90	37	10	36	0	7	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	t0003	1498	61	4	1	49	2	5	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	t0004	1498	40	0	22	4	6	8	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	t0005	1498	17	11	2	2	1	1	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	t0006	1498	15	0	1	12	0	2	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	t0007	1498	14	13	1	0	0	0	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	t0008	1498	11	11	0	0	0	0	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	t0009	1498	8	6	1	0	1	0	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	t0010	1498	7	1	1	5	0	0	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	t0011	1498	7	1	3	0	1	2	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	t0012	1498	5	5	0	0	0	0	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	t0013	1498	2	0	0	2	0	0	copy fasta	NR1I2	chr3	119777101	119823487