JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NR1I2_chr3_119777101_119823487	0/0	t0014	1498	2	0	0	2	0	0	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	t0015	1498	2	2	0	0	0	0	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	t0016	1498	1	0	0	1	0	0	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	t0017	1498	1	0	0	1	0	0	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	t0018	1498	1	0	0	1	0	0	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	t0019	1498	1	0	0	0	1	0	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	t0020	1498	1	0	0	1	0	0	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	t0021	1498	1	0	1	0	0	0	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	t0022	1498	1	0	0	1	0	0	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	t0023	1498	1	0	0	0	0	1	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	t0024	1498	1	1	0	0	0	0	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	t0025	1498	1	0	1	0	0	0	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	t0026	1498	1	1	0	0	0	0	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	t0027	1498	1	0	0	1	0	0	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	1/0	t0028	1498	1	0	0	0	0	0	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	t0029	1498	1	1	0	0	0	0	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	t0030	1498	1	0	1	0	0	0	copy fasta	NR1I2	chr3	119777101	119823487
NR1I3_chr1_161224669_161243203	1/1	t0001	325	433	86	78	201	16	50	copy fasta	NR1I3	chr1	161224669	161243203
NR1I3_chr1_161224669_161243203	0/0	t0002	325	2	2	0	0	0	0	copy fasta	NR1I3	chr1	161224669	161243203
NR1I3_chr1_161224669_161243203	0/0	t0003	325	1	0	0	1	0	0	copy fasta	NR1I3	chr1	161224669	161243203
NR2C1_chr12_95015229_95078618	1/0	t0001	2247	283	53	49	145	7	28	copy fasta	NR2C1	chr12	95015229	95078618
NR2C1_chr12_95015229_95078618	0/1	t0002	2247	93	12	16	48	6	10	copy fasta	NR2C1	chr12	95015229	95078618
NR2C1_chr12_95015229_95078618	0/0	t0003	2247	17	9	3	1	0	4	copy fasta	NR2C1	chr12	95015229	95078618
NR2C1_chr12_95015229_95078618	0/0	t0004	2248	6	0	2	0	4	0	copy fasta	NR2C1	chr12	95015229	95078618
NR2C1_chr12_95015229_95078618	0/0	t0005	2248	5	0	4	0	0	1	copy fasta	NR2C1	chr12	95015229	95078618
NR2C1_chr12_95015229_95078618	0/0	t0006	2247	5	5	0	0	0	0	copy fasta	NR2C1	chr12	95015229	95078618
NR2C1_chr12_95015229_95078618	0/0	t0007	2247	4	4	0	0	0	0	copy fasta	NR2C1	chr12	95015229	95078618
NR2C1_chr12_95015229_95078618	0/0	t0008	2247	3	3	0	0	0	0	copy fasta	NR2C1	chr12	95015229	95078618
NR2C1_chr12_95015229_95078618	0/0	t0009	2247	2	0	0	0	1	1	copy fasta	NR2C1	chr12	95015229	95078618
NR2C1_chr12_95015229_95078618	0/0	t0010	2247	2	2	0	0	0	0	copy fasta	NR2C1	chr12	95015229	95078618
NR2C1_chr12_95015229_95078618	0/0	t0011	2247	1	0	1	0	0	0	copy fasta	NR2C1	chr12	95015229	95078618
NR2C1_chr12_95015229_95078618	0/0	t0012	2247	1	0	0	1	0	0	copy fasta	NR2C1	chr12	95015229	95078618
NR2C1_chr12_95015229_95078618	0/0	t0013	2247	1	0	0	1	0	0	copy fasta	NR2C1	chr12	95015229	95078618
NR2C1_chr12_95015229_95078618	0/0	t0014	2247	1	1	0	0	0	0	copy fasta	NR2C1	chr12	95015229	95078618
NR2C1_chr12_95015229_95078618	0/0	t0015	2247	1	0	0	1	0	0	copy fasta	NR2C1	chr12	95015229	95078618
NR2C1_chr12_95015229_95078618	0/0	t0016	2247	1	1	0	0	0	0	copy fasta	NR2C1	chr12	95015229	95078618
NR2C1_chr12_95015229_95078618	0/0	t0017	2247	1	0	0	1	0	0	copy fasta	NR2C1	chr12	95015229	95078618
NR2C1_chr12_95015229_95078618	0/0	t0018	2247	1	1	0	0	0	0	copy fasta	NR2C1	chr12	95015229	95078618
NR2C1_chr12_95015229_95078618	0/0	t0019	2247	1	0	1	0	0	0	copy fasta	NR2C1	chr12	95015229	95078618
NR2C1_chr12_95015229_95078618	0/0	t0020	2247	1	1	0	0	0	0	copy fasta	NR2C1	chr12	95015229	95078618
NR2C2AP_chr19_19196409_19208414	1/1	t0001	871	362	75	68	158	15	44	copy fasta	NR2C2AP	chr19	19196409	19208414
NR2C2AP_chr19_19196409_19208414	0/0	t0002	871	35	0	0	35	0	0	copy fasta	NR2C2AP	chr19	19196409	19208414
NR2C2AP_chr19_19196409_19208414	0/0	t0003	871	11	11	0	0	0	0	copy fasta	NR2C2AP	chr19	19196409	19208414
NR2C2AP_chr19_19196409_19208414	0/0	t0004	871	8	8	0	0	0	0	copy fasta	NR2C2AP	chr19	19196409	19208414
NR2C2AP_chr19_19196409_19208414	0/0	t0005	871	1	1	0	0	0	0	copy fasta	NR2C2AP	chr19	19196409	19208414
NR2C2AP_chr19_19196409_19208414	0/0	t0006	871	1	0	1	0	0	0	copy fasta	NR2C2AP	chr19	19196409	19208414
NR2C2AP_chr19_19196409_19208414	0/0	t0007	871	1	1	0	0	0	0	copy fasta	NR2C2AP	chr19	19196409	19208414
NR2C2AP_chr19_19196409_19208414	0/0	t0008	871	1	0	0	0	0	1	copy fasta	NR2C2AP	chr19	19196409	19208414
NR2C2AP_chr19_19196409_19208414	0/0	t0009	871	1	0	0	0	0	1	copy fasta	NR2C2AP	chr19	19196409	19208414
NR2C2AP_chr19_19196409_19208414	0/0	t0010	871	1	0	1	0	0	0	copy fasta	NR2C2AP	chr19	19196409	19208414