JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NR2C2AP_chr19_19196409_19208414	0/0	t0011	871	1	0	0	0	1	0	copy fasta	NR2C2AP	chr19	19196409	19208414
NR2C2AP_chr19_19196409_19208414	0/0	t0012	871	1	1	0	0	0	0	copy fasta	NR2C2AP	chr19	19196409	19208414
NR2C2AP_chr19_19196409_19208414	0/0	t0013	871	1	0	0	1	0	0	copy fasta	NR2C2AP	chr19	19196409	19208414
NR2C2AP_chr19_19196409_19208414	0/0	t0014	871	1	1	0	0	0	0	copy fasta	NR2C2AP	chr19	19196409	19208414
NR2C2_chr3_14942583_15054273	1/1	t0001	6629	132	13	26	68	2	21	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0002	6633	38	3	13	18	1	3	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0003	6629	25	3	6	13	0	3	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0004	6629	16	14	2	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0005	6633	14	12	2	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0006	6629	10	3	3	0	3	1	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0007	6629	8	8	0	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0008	6628	5	0	2	0	3	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0009	6629	5	0	3	1	0	1	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0010	6633	4	0	0	4	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0011	6633	4	0	2	0	0	2	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0012	6629	4	4	0	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0013	6629	4	4	0	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0014	6633	3	2	1	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0015	6633	3	0	0	0	0	3	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0016	6629	2	2	0	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0017	6629	2	2	0	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0018	6633	2	1	1	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0019	6629	2	2	0	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0020	6629	2	0	2	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0021	6629	1	1	0	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0022	6629	1	0	0	1	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0023	6629	1	0	0	1	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0024	6633	1	0	1	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0025	6633	1	0	1	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0026	6633	1	0	0	1	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0027	6633	1	1	0	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0028	6633	1	1	0	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0029	6629	1	1	0	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0030	6629	1	1	0	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0031	6633	1	0	0	0	0	1	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0032	6633	1	0	0	0	0	1	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0033	6629	1	0	1	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0034	6629	1	1	0	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0035	6629	1	0	0	0	0	1	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0036	6629	1	0	0	1	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0037	6629	1	0	0	0	1	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0038	6629	1	1	0	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0039	6629	1	1	0	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0040	6629	1	1	0	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0041	6629	1	0	0	0	0	1	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0042	6629	1	1	0	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	t0043	6629	1	1	0	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2E1_chr6_108161022_108193805	0/1	t0001	2089	65	11	20	26	4	3	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	1/0	t0002	2087	43	2	6	29	1	4	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0003	2087	42	9	6	16	4	7	copy fasta	NR2E1	chr6	108161022	108193805