JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NR2E1_chr6_108161022_108193805	0/0	t0004	2083	32	25	1	3	1	2	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0005	2085	30	0	3	21	2	4	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0006	2091	28	7	2	14	0	5	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0007	2085	20	8	3	8	0	1	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0008	2089	19	1	4	11	1	2	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0009	2093	16	8	0	8	0	0	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0010	2075	12	0	3	4	0	5	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0011	2091	10	0	3	7	0	0	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0012	2083	10	0	5	5	0	0	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0013	2079	9	6	2	0	0	1	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0014	2095	8	1	1	3	2	1	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0015	2077	7	5	0	0	0	2	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0016	2093	5	0	0	3	1	1	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0017	2087	5	5	0	0	0	0	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0018	2097	4	1	0	3	0	0	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0019	2089	3	0	3	0	0	0	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0020	2085	2	0	0	1	0	1	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0021	2097	2	0	0	2	0	0	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0022	2095	2	0	1	1	0	0	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0023	2091	1	0	0	1	0	0	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0024	2087	1	0	1	0	0	0	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0025	2083	1	0	1	0	0	0	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0026	2091	1	0	0	1	0	0	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0027	2087	1	0	0	1	0	0	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0028	2087	1	1	0	0	0	0	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0029	2079	1	0	0	1	0	0	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0030	2095	1	1	0	0	0	0	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0031	2091	1	0	1	0	0	0	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0032	2054	1	0	0	1	0	0	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0033	2087	1	1	0	0	0	0	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0034	2091	1	0	0	0	0	1	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0035	2099	1	1	0	0	0	0	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0036	2087	1	1	0	0	0	0	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0037	2087	1	1	0	0	0	0	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0038	2087	1	1	0	0	0	0	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0039	2077	1	1	0	0	0	0	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	t0040	2093	1	1	0	0	0	0	copy fasta	NR2E1	chr6	108161022	108193805
NR2E3_chr15_71805554_71823253	1/1	t0001	760	325	79	73	131	10	30	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	t0002	760	55	2	0	52	1	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	t0003	760	12	0	3	9	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	t0004	761	7	2	3	1	1	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	t0005	761	6	5	1	0	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	t0006	760	5	0	0	5	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	t0007	760	4	4	0	0	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	t0008	757	3	1	0	0	0	2	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	t0009	760	2	2	0	0	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	t0010	760	1	0	0	0	1	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	t0011	760	1	0	0	1	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	t0012	760	1	0	0	1	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	t0013	760	1	1	0	0	0	0	copy fasta	NR2E3	chr15	71805554	71823253