JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NR2E3_chr15_71805554_71823253	0/0	t0014	760	1	0	0	0	1	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2F1_chr5_93578222_93599611	1/0	t0001	2572	201	77	38	57	10	18	copy fasta	NR2F1	chr5	93578222	93599611
NR2F1_chr5_93578222_93599611	0/1	t0002	2574	41	4	12	16	3	5	copy fasta	NR2F1	chr5	93578222	93599611
NR2F1_chr5_93578222_93599611	0/0	t0003	2573	11	2	4	3	0	2	copy fasta	NR2F1	chr5	93578222	93599611
NR2F1_chr5_93578222_93599611	0/0	t0004	2573	6	1	0	1	0	4	copy fasta	NR2F1	chr5	93578222	93599611
NR2F1_chr5_93578222_93599611	0/0	t0005	2572	5	5	0	0	0	0	copy fasta	NR2F1	chr5	93578222	93599611
NR2F1_chr5_93578222_93599611	0/0	t0006	2576	4	0	0	4	0	0	copy fasta	NR2F1	chr5	93578222	93599611
NR2F1_chr5_93578222_93599611	0/0	t0007	2568	3	0	2	1	0	0	copy fasta	NR2F1	chr5	93578222	93599611
NR2F1_chr5_93578222_93599611	0/0	t0008	2574	2	0	0	2	0	0	copy fasta	NR2F1	chr5	93578222	93599611
NR2F1_chr5_93578222_93599611	0/0	t0009	2575	2	0	0	1	0	1	copy fasta	NR2F1	chr5	93578222	93599611
NR2F1_chr5_93578222_93599611	0/0	t0010	2572	1	0	0	0	0	1	copy fasta	NR2F1	chr5	93578222	93599611
NR2F1_chr5_93578222_93599611	0/0	t0011	2543	1	0	1	0	0	0	copy fasta	NR2F1	chr5	93578222	93599611
NR2F1_chr5_93578222_93599611	0/0	t0012	2574	1	0	0	0	0	1	copy fasta	NR2F1	chr5	93578222	93599611
NR2F1_chr5_93578222_93599611	0/0	t0013	2574	1	0	0	0	0	1	copy fasta	NR2F1	chr5	93578222	93599611
NR2F1_chr5_93578222_93599611	0/0	t0014	2575	1	0	0	1	0	0	copy fasta	NR2F1	chr5	93578222	93599611
NR2F1_chr5_93578222_93599611	0/0	t0015	2576	1	0	0	0	0	1	copy fasta	NR2F1	chr5	93578222	93599611
NR2F1_chr5_93578222_93599611	0/0	t0016	2572	1	0	0	1	0	0	copy fasta	NR2F1	chr5	93578222	93599611
NR2F1_chr5_93578222_93599611	0/0	t0017	2572	1	0	0	0	0	1	copy fasta	NR2F1	chr5	93578222	93599611
NR2F1_chr5_93578222_93599611	0/0	t0018	2572	1	0	0	0	1	0	copy fasta	NR2F1	chr5	93578222	93599611
NR2F1_chr5_93578222_93599611	0/0	t0019	2572	1	0	0	1	0	0	copy fasta	NR2F1	chr5	93578222	93599611
NR2F1_chr5_93578222_93599611	0/0	t0020	2572	1	0	1	0	0	0	copy fasta	NR2F1	chr5	93578222	93599611
NR2F1_chr5_93578222_93599611	0/0	t0021	2572	1	1	0	0	0	0	copy fasta	NR2F1	chr5	93578222	93599611
NR2F1_chr5_93578222_93599611	0/0	t0022	2572	1	1	0	0	0	0	copy fasta	NR2F1	chr5	93578222	93599611
NR2F1_chr5_93578222_93599611	0/0	t0023	2572	1	0	0	1	0	0	copy fasta	NR2F1	chr5	93578222	93599611
NR2F1_chr5_93578222_93599611	0/0	t0024	2572	1	0	0	1	0	0	copy fasta	NR2F1	chr5	93578222	93599611
NR2F1_chr5_93578222_93599611	0/0	t0025	2574	1	0	0	1	0	0	copy fasta	NR2F1	chr5	93578222	93599611
NR2F1_chr5_93578222_93599611	0/0	t0026	2587	1	0	0	1	0	0	copy fasta	NR2F1	chr5	93578222	93599611
NR2F1_chr5_93578222_93599611	0/0	t0027	2572	1	0	0	0	0	1	copy fasta	NR2F1	chr5	93578222	93599611
NR2F1_chr5_93578222_93599611	0/0	t0028	2572	1	1	0	0	0	0	copy fasta	NR2F1	chr5	93578222	93599611
NR2F2_chr15_96325700_96345258	0/0	t0001	4040	95	2	17	75	0	1	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	1/0	t0002	4043	45	2	15	13	4	10	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0003	4047	20	1	8	0	6	5	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0004	4044	20	3	1	15	0	1	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0005	4040	13	12	1	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0006	4041	10	0	1	9	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0007	4044	9	0	4	2	0	3	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0008	4039	8	8	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0009	4044	8	0	8	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0010	4044	8	1	0	7	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/1	t0011	4040	7	0	2	3	0	1	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0012	4043	7	0	1	6	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0013	4033	5	5	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0014	4043	5	1	0	1	1	2	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0015	4042	5	1	1	3	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0016	4041	5	1	0	3	0	1	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0017	4041	5	5	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0018	4039	5	1	0	4	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0019	4040	4	4	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0020	4041	4	3	1	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0021	4039	4	3	1	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258