JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NR2F2_chr15_96325700_96345258	0/0	t0022	4043	4	0	0	4	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0023	4042	4	0	0	4	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0024	4047	4	0	0	4	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0025	4042	3	3	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0026	4039	3	3	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0027	4039	3	3	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0028	4044	3	1	1	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0029	4047	3	0	2	0	1	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0030	4048	3	0	3	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0031	4044	3	1	1	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0032	4040	3	3	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0033	4041	3	3	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0034	4045	3	1	0	2	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0035	4042	3	2	1	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0036	4044	3	0	0	2	0	1	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0037	4042	3	1	0	2	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0038	4043	3	0	2	0	0	1	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0039	4031	2	1	1	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0040	4030	2	2	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0041	4034	2	2	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0042	4041	2	2	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0043	4043	2	0	0	0	0	2	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0044	4039	2	2	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0045	4047	2	0	0	0	2	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0046	4044	2	0	0	2	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0047	4042	2	0	1	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0048	4039	2	0	0	1	0	1	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0049	4040	2	0	0	2	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0050	4045	2	0	0	2	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0051	4043	2	0	0	0	0	2	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0052	4045	2	0	0	1	0	1	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0053	4040	2	0	0	2	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0054	4043	2	0	2	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0055	4040	1	0	0	0	0	1	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0056	4054	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0057	4032	1	0	1	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0058	4034	1	1	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0059	4034	1	1	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0060	4031	1	1	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0061	4032	1	1	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0062	4033	1	1	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0063	4042	1	0	1	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0064	4041	1	1	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0065	4040	1	1	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0066	4044	1	1	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0067	4043	1	0	0	0	0	1	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0068	4030	1	1	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0069	4043	1	0	0	0	0	1	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0070	4044	1	0	0	0	0	1	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0071	4042	1	0	0	0	0	1	copy fasta	NR2F2	chr15	96325700	96345258