Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARPC1B_chr7_99369730_99399816	0/0	t0024	393	1	0	0	0	0	1	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	t0025	399	1	1	0	0	0	0	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC2_chr2_218212189_218259348	1/1	t0001	508	309	70	69	124	12	32	copy fasta	ARPC2	chr2	218212189	218259348
ARPC2_chr2_218212189_218259348	0/0	t0002	509	10	10	0	0	0	0	copy fasta	ARPC2	chr2	218212189	218259348
ARPC2_chr2_218212189_218259348	0/0	t0003	507	7	2	1	4	0	0	copy fasta	ARPC2	chr2	218212189	218259348
ARPC2_chr2_218212189_218259348	0/0	t0004	509	4	3	0	1	0	0	copy fasta	ARPC2	chr2	218212189	218259348
ARPC2_chr2_218212189_218259348	0/0	t0005	509	1	0	0	1	0	0	copy fasta	ARPC2	chr2	218212189	218259348
ARPC2_chr2_218212189_218259348	0/0	t0006	508	1	1	0	0	0	0	copy fasta	ARPC2	chr2	218212189	218259348
ARPC3_chr12_110429823_110455337	1/1	t0001	410	318	82	60	123	16	35	copy fasta	ARPC3	chr12	110429823	110455337
ARPC3_chr12_110429823_110455337	0/0	t0002	410	6	6	0	0	0	0	copy fasta	ARPC3	chr12	110429823	110455337
ARPC3_chr12_110429823_110455337	0/0	t0003	410	6	0	6	0	0	0	copy fasta	ARPC3	chr12	110429823	110455337
ARPC3_chr12_110429823_110455337	0/0	t0004	410	2	0	2	0	0	0	copy fasta	ARPC3	chr12	110429823	110455337
ARPC3_chr12_110429823_110455337	0/0	t0005	410	1	0	0	0	0	1	copy fasta	ARPC3	chr12	110429823	110455337
ARPC3_chr12_110429823_110455337	0/0	t0006	410	1	0	0	1	0	0	copy fasta	ARPC3	chr12	110429823	110455337
ARPC4_chr3_9788082_9812101	1/1	t0001	927	253	44	35	134	6	32	copy fasta	ARPC4	chr3	9788082	9812101
ARPC4_chr3_9788082_9812101	0/0	t0002	926	123	45	25	33	8	12	copy fasta	ARPC4	chr3	9788082	9812101
ARPC4_chr3_9788082_9812101	0/0	t0003	925	37	3	6	22	4	2	copy fasta	ARPC4	chr3	9788082	9812101
ARPC4_chr3_9788082_9812101	0/0	t0004	927	13	0	0	13	0	0	copy fasta	ARPC4	chr3	9788082	9812101
ARPC4_chr3_9788082_9812101	0/0	t0005	928	8	2	0	6	0	0	copy fasta	ARPC4	chr3	9788082	9812101
ARPC4_chr3_9788082_9812101	0/0	t0006	926	3	0	0	3	0	0	copy fasta	ARPC4	chr3	9788082	9812101
ARPC4_chr3_9788082_9812101	0/0	t0007	926	2	0	2	0	0	0	copy fasta	ARPC4	chr3	9788082	9812101
ARPC4_chr3_9788082_9812101	0/0	t0008	926	1	0	0	1	0	0	copy fasta	ARPC4	chr3	9788082	9812101
ARPC4_chr3_9788082_9812101	0/0	t0009	925	1	0	0	1	0	0	copy fasta	ARPC4	chr3	9788082	9812101
ARPC4_chr3_9788082_9812101	0/0	t0010	926	1	0	0	1	0	0	copy fasta	ARPC4	chr3	9788082	9812101
ARPC4_chr3_9788082_9812101	0/0	t0011	926	1	1	0	0	0	0	copy fasta	ARPC4	chr3	9788082	9812101
ARPC4_chr3_9788082_9812101	0/0	t0012	927	1	1	0	0	0	0	copy fasta	ARPC4	chr3	9788082	9812101
ARPC4_chr3_9788082_9812101	0/0	t0013	927	1	0	0	1	0	0	copy fasta	ARPC4	chr3	9788082	9812101
ARPC4_chr3_9788082_9812101	0/0	t0014	927	1	0	0	1	0	0	copy fasta	ARPC4	chr3	9788082	9812101
ARPC5L_chr9_124857130_124882733	1/1	t0001	2046	282	75	55	110	12	28	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5L_chr9_124857130_124882733	0/0	t0002	2041	44	4	1	35	0	4	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5L_chr9_124857130_124882733	0/0	t0003	2046	15	1	7	0	1	6	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5L_chr9_124857130_124882733	0/0	t0004	2046	13	0	6	7	0	0	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5L_chr9_124857130_124882733	0/0	t0005	2046	8	8	0	0	0	0	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5L_chr9_124857130_124882733	0/0	t0006	2047	7	0	0	7	0	0	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5L_chr9_124857130_124882733	0/0	t0007	2041	7	0	0	7	0	0	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5L_chr9_124857130_124882733	0/0	t0008	2041	5	0	0	5	0	0	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5L_chr9_124857130_124882733	0/0	t0009	2046	3	3	0	0	0	0	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5L_chr9_124857130_124882733	0/0	t0010	2046	2	0	0	2	0	0	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5L_chr9_124857130_124882733	0/0	t0011	2046	2	0	0	0	2	0	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5L_chr9_124857130_124882733	0/0	t0012	2046	1	0	0	0	0	1	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5L_chr9_124857130_124882733	0/0	t0013	2046	1	0	1	0	0	0	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5L_chr9_124857130_124882733	0/0	t0014	2051	1	0	0	1	0	0	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5L_chr9_124857130_124882733	0/0	t0015	2046	1	0	0	1	0	0	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5L_chr9_124857130_124882733	0/0	t0016	2046	1	1	0	0	0	0	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5L_chr9_124857130_124882733	0/0	t0017	2030	1	0	1	0	0	0	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5L_chr9_124857130_124882733	0/0	t0018	2046	1	1	0	0	0	0	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5L_chr9_124857130_124882733	0/0	t0019	2041	1	0	0	0	0	1	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5L_chr9_124857130_124882733	0/0	t0020	2046	1	0	0	1	0	0	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5L_chr9_124857130_124882733	0/0	t0021	2046	1	0	0	1	0	0	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5L_chr9_124857130_124882733	0/0	t0022	2046	1	0	0	0	1	0	copy fasta	ARPC5L	chr9	124857130	124882733