JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NR2F2_chr15_96325700_96345258	0/0	t0072	4043	1	0	0	0	0	1	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0073	4040	1	1	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0074	4038	1	1	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0075	4043	1	0	0	0	0	1	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0076	4046	1	0	0	0	1	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0077	4045	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0078	4045	1	0	1	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0079	4045	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0080	4048	1	0	1	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0081	4043	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0082	4042	1	0	0	0	0	1	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0083	4042	1	0	0	0	0	1	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0084	4042	1	0	0	0	0	1	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0085	4043	1	0	0	0	0	1	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0086	4046	1	0	1	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0087	4057	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0088	4041	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0089	4041	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0090	4042	1	0	0	0	0	1	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0091	4040	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0092	4040	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0093	4039	1	0	0	0	1	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0094	4040	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0095	4041	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0096	4040	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0097	4041	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0098	4039	1	1	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0099	4040	1	1	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0100	4038	1	1	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0101	4040	1	0	1	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0102	4044	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0103	4045	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0104	4041	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0105	4053	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0106	4041	1	1	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0107	4033	1	1	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0108	4045	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0109	4044	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0110	4044	1	0	0	0	0	1	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0111	4044	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0112	4043	1	1	0	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0113	4043	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0114	4041	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0115	4042	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0116	4040	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0117	4045	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0118	4045	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0119	4043	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0120	4043	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0121	4046	1	0	0	0	0	1	copy fasta	NR2F2	chr15	96325700	96345258