JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NR2F2_chr15_96325700_96345258	0/0	t0122	4043	1	0	1	0	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0123	4047	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	t0124	4048	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F6_chr19_17226883_17250919	1/1	t0001	1169	406	92	82	169	16	45	copy fasta	NR2F6	chr19	17226883	17250919
NR2F6_chr19_17226883_17250919	0/0	t0002	1169	1	0	0	1	0	0	copy fasta	NR2F6	chr19	17226883	17250919
NR2F6_chr19_17226883_17250919	0/0	t0003	1169	1	1	0	0	0	0	copy fasta	NR2F6	chr19	17226883	17250919
NR2F6_chr19_17226883_17250919	0/0	t0004	1169	1	0	0	1	0	0	copy fasta	NR2F6	chr19	17226883	17250919
NR2F6_chr19_17226883_17250919	0/0	t0005	1169	1	1	0	0	0	0	copy fasta	NR2F6	chr19	17226883	17250919
NR2F6_chr19_17226883_17250919	0/0	t0006	1169	1	1	0	0	0	0	copy fasta	NR2F6	chr19	17226883	17250919
NR2F6_chr19_17226883_17250919	0/0	t0007	1169	1	1	0	0	0	0	copy fasta	NR2F6	chr19	17226883	17250919
NR2F6_chr19_17226883_17250919	0/0	t0008	1169	1	0	0	1	0	0	copy fasta	NR2F6	chr19	17226883	17250919
NR2F6_chr19_17226883_17250919	0/0	t0009	1169	1	0	0	0	0	1	copy fasta	NR2F6	chr19	17226883	17250919
NR3C1_chr5_143272934_143408686	0/0	t0001	4446	107	35	17	41	5	9	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/1	t0002	4447	41	1	7	23	4	5	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0003	4449	19	2	9	0	3	5	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0004	4446	14	4	5	4	1	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0005	4448	13	10	2	0	1	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0006	4447	12	3	0	9	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0007	4447	11	11	0	0	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0008	4447	9	9	0	0	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0009	4451	7	0	0	7	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0010	4447	5	0	2	1	0	2	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0011	4446	2	2	0	0	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0012	4446	1	0	0	0	0	1	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0013	4446	1	1	0	0	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0014	4446	1	1	0	0	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	1/0	t0015	4445	1	0	0	0	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0016	4448	1	0	0	1	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0017	4447	1	0	0	1	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0018	4447	1	0	0	1	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0019	4446	1	0	0	1	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0020	4446	1	0	0	1	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0021	4446	1	1	0	0	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0022	4449	1	0	0	0	1	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0023	4448	1	0	0	0	1	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0024	4447	1	0	1	0	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0025	4447	1	0	0	1	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0026	4446	1	1	0	0	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0027	4446	1	1	0	0	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0028	4446	1	0	0	1	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0029	4446	1	0	0	1	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0030	4446	1	1	0	0	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0031	4446	1	0	0	1	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0032	4445	1	0	0	0	0	1	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0033	4445	1	0	1	0	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0034	4446	1	1	0	0	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0035	4446	1	1	0	0	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0036	4447	1	0	0	0	0	1	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	t0037	4446	1	1	0	0	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C2_chr4_148073764_148447414	0/0	t0001	2837	37	9	13	12	1	2	copy fasta	NR3C2	chr4	148073764	148447414