JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NR3C2_chr4_148073764_148447414	1/1	t0002	2838	33	22	3	5	0	1	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	t0003	2837	30	1	7	17	2	3	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	t0004	2838	20	4	4	8	1	3	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	t0005	2838	18	17	0	0	0	1	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	t0006	2833	5	5	0	0	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	t0007	2837	5	0	3	0	0	2	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	t0008	2837	3	1	2	0	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	t0009	2837	2	2	0	0	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	t0010	2838	2	1	0	1	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	t0011	2838	2	2	0	0	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	t0012	2837	2	0	0	2	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	t0013	2838	1	1	0	0	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	t0014	2838	1	0	1	0	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	t0015	2833	1	1	0	0	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	t0016	2837	1	1	0	0	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	t0017	2838	1	0	0	1	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	t0018	2838	1	0	0	1	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	t0019	2834	1	1	0	0	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	t0020	2837	1	0	0	1	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	t0021	2837	1	0	0	1	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	t0022	2837	1	0	1	0	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	t0023	2838	1	0	0	1	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR4A1_chr12_52046442_52064503	1/1	t0001	689	305	32	59	160	15	37	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	t0002	689	60	24	5	27	1	3	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	t0003	689	40	36	4	0	0	0	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	t0004	689	5	0	0	0	2	3	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	t0005	689	5	5	0	0	0	0	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	t0006	689	3	0	3	0	0	0	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	t0007	689	1	0	1	0	0	0	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	t0008	689	1	0	0	0	0	1	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	t0009	689	1	0	0	1	0	0	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	t0010	689	1	1	0	0	0	0	copy fasta	NR4A1	chr12	52046442	52064503
NR4A2_chr2_156319437_156337721	0/0	t0001	1676	273	51	50	145	5	22	copy fasta	NR4A2	chr2	156319437	156337721
NR4A2_chr2_156319437_156337721	0/1	t0002	1674	89	7	16	41	5	19	copy fasta	NR4A2	chr2	156319437	156337721
NR4A2_chr2_156319437_156337721	0/0	t0003	1674	11	10	0	1	0	0	copy fasta	NR4A2	chr2	156319437	156337721
NR4A2_chr2_156319437_156337721	1/0	t0004	1676	5	4	0	0	0	0	copy fasta	NR4A2	chr2	156319437	156337721
NR4A2_chr2_156319437_156337721	0/0	t0005	1674	3	3	0	0	0	0	copy fasta	NR4A2	chr2	156319437	156337721
NR4A2_chr2_156319437_156337721	0/0	t0006	1674	1	0	0	0	0	1	copy fasta	NR4A2	chr2	156319437	156337721
NR4A2_chr2_156319437_156337721	0/0	t0007	1674	1	1	0	0	0	0	copy fasta	NR4A2	chr2	156319437	156337721
NR4A2_chr2_156319437_156337721	0/0	t0008	1676	1	0	0	1	0	0	copy fasta	NR4A2	chr2	156319437	156337721
NR4A2_chr2_156319437_156337721	0/0	t0009	1676	1	0	1	0	0	0	copy fasta	NR4A2	chr2	156319437	156337721
NR4A2_chr2_156319437_156337721	0/0	t0010	1676	1	0	1	0	0	0	copy fasta	NR4A2	chr2	156319437	156337721
NR4A3_chr9_99816885_99871891	0/1	t0001	3727	97	55	16	13	4	8	copy fasta	NR4A3	chr9	99816885	99871891
NR4A3_chr9_99816885_99871891	0/0	t0002	3729	86	15	19	41	2	9	copy fasta	NR4A3	chr9	99816885	99871891
NR4A3_chr9_99816885_99871891	1/0	t0003	3724	61	0	11	45	0	4	copy fasta	NR4A3	chr9	99816885	99871891
NR4A3_chr9_99816885_99871891	0/0	t0004	3727	24	0	5	12	2	5	copy fasta	NR4A3	chr9	99816885	99871891
NR4A3_chr9_99816885_99871891	0/0	t0005	3727	1	1	0	0	0	0	copy fasta	NR4A3	chr9	99816885	99871891
NR4A3_chr9_99816885_99871891	0/0	t0006	3724	1	0	0	1	0	0	copy fasta	NR4A3	chr9	99816885	99871891
NR4A3_chr9_99816885_99871891	0/0	t0007	3724	1	0	0	1	0	0	copy fasta	NR4A3	chr9	99816885	99871891
NR4A3_chr9_99816885_99871891	0/0	t0008	3724	1	0	0	0	0	1	copy fasta	NR4A3	chr9	99816885	99871891