JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NR4A3_chr9_99816885_99871891	0/0	t0009	3727	1	1	0	0	0	0	copy fasta	NR4A3	chr9	99816885	99871891
NR4A3_chr9_99816885_99871891	0/0	t0010	3681	1	0	1	0	0	0	copy fasta	NR4A3	chr9	99816885	99871891
NR4A3_chr9_99816885_99871891	0/0	t0011	3727	1	1	0	0	0	0	copy fasta	NR4A3	chr9	99816885	99871891
NR4A3_chr9_99816885_99871891	0/0	t0012	3727	1	0	0	0	0	1	copy fasta	NR4A3	chr9	99816885	99871891
NR4A3_chr9_99816885_99871891	0/0	t0013	3729	1	0	0	1	0	0	copy fasta	NR4A3	chr9	99816885	99871891
NR4A3_chr9_99816885_99871891	0/0	t0014	3727	1	1	0	0	0	0	copy fasta	NR4A3	chr9	99816885	99871891
NR5A1_chr9_124476236_124512399	0/0	t0001	1688	200	58	28	92	6	16	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	1/1	t0002	1689	106	11	27	39	4	23	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	t0003	1689	16	3	0	9	0	4	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	t0004	1689	7	7	0	0	0	0	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	t0005	1689	5	5	0	0	0	0	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	t0006	1690	4	4	0	0	0	0	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	t0007	1689	3	1	1	1	0	0	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	t0008	1689	2	1	1	0	0	0	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	t0009	1688	1	0	0	0	0	1	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	t0010	1708	1	1	0	0	0	0	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	t0011	1688	1	0	1	0	0	0	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	t0012	1689	1	1	0	0	0	0	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	t0013	1689	1	0	0	1	0	0	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	t0014	1689	1	0	0	0	0	1	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	t0015	1689	1	0	0	0	0	1	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	t0016	1689	1	1	0	0	0	0	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	t0017	1688	1	0	0	1	0	0	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	t0018	1688	1	1	0	0	0	0	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	t0019	1689	1	1	0	0	0	0	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	t0020	1688	1	0	0	1	0	0	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	t0021	1688	1	1	0	0	0	0	copy fasta	NR5A1	chr9	124476236	124512399
NR5A2_chr1_200022710_200182415	1/1	t0001	3344	86	6	12	53	3	10	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0002	3343	51	13	23	1	4	10	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0003	3343	28	0	6	16	0	6	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0004	3344	23	22	1	0	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0005	3343	21	4	8	2	3	4	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0006	3343	17	16	1	0	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0007	3344	8	6	1	1	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0008	3342	8	0	2	5	0	1	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0009	3343	6	6	0	0	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0010	3340	5	1	1	0	0	3	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0011	3343	5	0	0	5	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0012	3343	3	3	0	0	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0013	3343	3	3	0	0	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0014	3344	2	0	2	0	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0015	3342	2	2	0	0	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0016	3343	2	2	0	0	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0017	3343	1	1	0	0	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0018	3342	1	1	0	0	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0019	3344	1	0	0	0	0	1	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0020	3344	1	1	0	0	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0021	3344	1	1	0	0	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0022	3343	1	1	0	0	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0023	3342	1	0	0	0	0	1	copy fasta	NR5A2	chr1	200022710	200182415