JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NR5A2_chr1_200022710_200182415	0/0	t0024	3343	1	0	0	0	0	1	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0025	3343	1	0	0	0	0	1	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0026	3343	1	0	0	1	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0027	3343	1	0	0	0	0	1	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0028	3344	1	0	0	0	0	1	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0029	3344	1	0	0	1	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0030	3344	1	0	0	1	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0031	3343	1	1	0	0	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	t0032	3343	1	0	1	0	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR6A1_chr9_124512275_124776311	1/1	t0001	5623	56	7	7	25	2	13	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0002	5624	55	3	7	35	2	8	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0003	5625	10	0	1	7	1	1	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0004	5627	6	3	0	3	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0005	5622	5	5	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0006	5623	4	1	0	3	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0007	5622	4	4	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0008	5624	4	4	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0009	5622	4	0	0	3	0	1	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0010	5623	4	4	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0011	5624	3	0	0	3	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0012	5625	3	0	0	3	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0013	5628	3	3	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0014	5623	3	2	1	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0015	5623	3	0	0	3	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0016	5623	3	3	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0017	5630	3	3	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0018	5627	2	2	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0019	5629	2	2	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0020	5630	2	2	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0021	5624	2	1	0	1	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0022	5624	2	2	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0023	5626	2	0	1	1	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0024	5630	2	2	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0025	5631	2	2	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0026	5611	2	0	1	0	0	1	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0027	5624	1	1	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0028	5621	1	1	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0029	5627	1	0	1	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0030	5626	1	1	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0031	5627	1	1	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0032	5625	1	0	0	1	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0033	5623	1	1	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0034	5626	1	1	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0035	5623	1	0	0	0	0	1	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0036	5609	1	1	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0037	5623	1	1	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0038	5623	1	1	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0039	5624	1	1	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0040	5625	1	1	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0041	5626	1	1	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311