JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NR6A1_chr9_124512275_124776311	0/0	t0042	5630	1	1	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0043	5624	1	0	0	1	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0044	5626	1	0	0	0	0	1	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0045	5624	1	1	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0046	5623	1	1	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0047	5624	1	1	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0048	5623	1	0	0	1	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0049	5625	1	1	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0050	5625	1	0	0	1	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0051	5624	1	0	0	1	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0052	5624	1	0	0	0	0	1	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0053	5624	1	0	0	1	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0054	5624	1	1	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0055	5624	1	0	0	1	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0056	5625	1	0	0	1	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0057	5626	1	0	0	1	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0058	5627	1	0	0	1	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0059	5627	1	0	0	1	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0060	5629	1	1	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0061	5629	1	1	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0062	5644	1	1	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0063	5623	1	0	1	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0064	5622	1	0	0	0	1	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0065	5624	1	1	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0066	5623	1	1	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0067	5624	1	1	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0068	5624	1	1	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	t0069	5634	1	0	0	0	0	1	copy fasta	NR6A1	chr9	124512275	124776311
NRAP_chr10_113583714_113669041	1/0	t0001	421	139	30	25	64	6	13	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	t0002	420	77	20	20	25	8	4	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/1	t0003	421	64	18	8	27	2	8	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	t0004	420	54	14	3	30	0	7	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	t0005	421	38	4	10	16	2	6	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	t0006	420	17	1	8	7	0	1	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	t0007	420	2	0	0	0	0	2	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	t0008	420	1	0	1	0	0	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	t0009	420	1	0	1	0	0	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	t0010	420	1	0	1	0	0	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	t0011	421	1	0	0	0	0	1	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	t0012	421	1	0	0	1	0	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	t0013	421	1	0	1	0	0	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	t0014	421	1	1	0	0	0	0	copy fasta	NRAP	chr10	113583714	113669041
NRARP_chr9_137294631_137307271	1/1	t0001	2297	214	54	46	82	9	21	copy fasta	NRARP	chr9	137294631	137307271
NRARP_chr9_137294631_137307271	0/0	t0002	2298	76	9	11	38	4	14	copy fasta	NRARP	chr9	137294631	137307271
NRARP_chr9_137294631_137307271	0/0	t0003	2297	34	21	7	3	1	2	copy fasta	NRARP	chr9	137294631	137307271
NRARP_chr9_137294631_137307271	0/0	t0004	2297	7	4	2	0	0	1	copy fasta	NRARP	chr9	137294631	137307271
NRARP_chr9_137294631_137307271	0/0	t0005	2297	4	4	0	0	0	0	copy fasta	NRARP	chr9	137294631	137307271
NRARP_chr9_137294631_137307271	0/0	t0006	2297	4	0	2	0	2	0	copy fasta	NRARP	chr9	137294631	137307271
NRARP_chr9_137294631_137307271	0/0	t0007	2298	4	0	0	3	0	1	copy fasta	NRARP	chr9	137294631	137307271
NRARP_chr9_137294631_137307271	0/0	t0008	2297	3	3	0	0	0	0	copy fasta	NRARP	chr9	137294631	137307271