JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NRARP_chr9_137294631_137307271	0/0	t0009	2297	2	0	0	0	0	2	copy fasta	NRARP	chr9	137294631	137307271
NRARP_chr9_137294631_137307271	0/0	t0010	2297	2	0	1	0	0	1	copy fasta	NRARP	chr9	137294631	137307271
NRARP_chr9_137294631_137307271	0/0	t0011	2297	2	0	0	2	0	0	copy fasta	NRARP	chr9	137294631	137307271
NRARP_chr9_137294631_137307271	0/0	t0012	2298	1	0	0	1	0	0	copy fasta	NRARP	chr9	137294631	137307271
NRARP_chr9_137294631_137307271	0/0	t0013	2297	1	1	0	0	0	0	copy fasta	NRARP	chr9	137294631	137307271
NRARP_chr9_137294631_137307271	0/0	t0014	2297	1	0	0	1	0	0	copy fasta	NRARP	chr9	137294631	137307271
NRARP_chr9_137294631_137307271	0/0	t0015	2297	1	1	0	0	0	0	copy fasta	NRARP	chr9	137294631	137307271
NRARP_chr9_137294631_137307271	0/0	t0016	2297	1	0	1	0	0	0	copy fasta	NRARP	chr9	137294631	137307271
NRARP_chr9_137294631_137307271	0/0	t0017	2297	1	1	0	0	0	0	copy fasta	NRARP	chr9	137294631	137307271
NRAS_chr1_114699469_114721771	1/1	t0001	3757	299	60	52	141	10	34	copy fasta	NRAS	chr1	114699469	114721771
NRAS_chr1_114699469_114721771	0/0	t0002	3756	32	7	15	3	2	5	copy fasta	NRAS	chr1	114699469	114721771
NRAS_chr1_114699469_114721771	0/0	t0003	3757	13	13	0	0	0	0	copy fasta	NRAS	chr1	114699469	114721771
NRAS_chr1_114699469_114721771	0/0	t0004	3757	6	0	0	6	0	0	copy fasta	NRAS	chr1	114699469	114721771
NRAS_chr1_114699469_114721771	0/0	t0005	3757	3	0	0	3	0	0	copy fasta	NRAS	chr1	114699469	114721771
NRAS_chr1_114699469_114721771	0/0	t0006	3757	3	3	0	0	0	0	copy fasta	NRAS	chr1	114699469	114721771
NRAS_chr1_114699469_114721771	0/0	t0007	3757	2	2	0	0	0	0	copy fasta	NRAS	chr1	114699469	114721771
NRAS_chr1_114699469_114721771	0/0	t0008	3757	2	2	0	0	0	0	copy fasta	NRAS	chr1	114699469	114721771
NRAS_chr1_114699469_114721771	0/0	t0009	3757	2	2	0	0	0	0	copy fasta	NRAS	chr1	114699469	114721771
NRAS_chr1_114699469_114721771	0/0	t0010	3757	2	2	0	0	0	0	copy fasta	NRAS	chr1	114699469	114721771
NRAS_chr1_114699469_114721771	0/0	t0011	3756	2	0	0	0	2	0	copy fasta	NRAS	chr1	114699469	114721771
NRAS_chr1_114699469_114721771	0/0	t0012	3757	1	1	0	0	0	0	copy fasta	NRAS	chr1	114699469	114721771
NRAS_chr1_114699469_114721771	0/0	t0013	3756	1	1	0	0	0	0	copy fasta	NRAS	chr1	114699469	114721771
NRAS_chr1_114699469_114721771	0/0	t0014	3757	1	0	0	0	0	1	copy fasta	NRAS	chr1	114699469	114721771
NRAS_chr1_114699469_114721771	0/0	t0015	3757	1	1	0	0	0	0	copy fasta	NRAS	chr1	114699469	114721771
NRAS_chr1_114699469_114721771	0/0	t0016	3757	1	1	0	0	0	0	copy fasta	NRAS	chr1	114699469	114721771
NRAS_chr1_114699469_114721771	0/0	t0017	3757	1	0	0	1	0	0	copy fasta	NRAS	chr1	114699469	114721771
NRAS_chr1_114699469_114721771	0/0	t0018	3757	1	0	0	1	0	0	copy fasta	NRAS	chr1	114699469	114721771
NRAS_chr1_114699469_114721771	0/0	t0019	3757	1	1	0	0	0	0	copy fasta	NRAS	chr1	114699469	114721771
NRAS_chr1_114699469_114721771	0/0	t0020	3757	1	0	0	1	0	0	copy fasta	NRAS	chr1	114699469	114721771
NRAS_chr1_114699469_114721771	0/0	t0021	3757	1	1	0	0	0	0	copy fasta	NRAS	chr1	114699469	114721771
NRAS_chr1_114699469_114721771	0/0	t0022	3757	1	0	1	0	0	0	copy fasta	NRAS	chr1	114699469	114721771
NRAS_chr1_114699469_114721771	0/0	t0023	3757	1	1	0	0	0	0	copy fasta	NRAS	chr1	114699469	114721771
NRBF2_chr10_63128328_63160024	1/1	t0001	950	175	64	34	54	3	18	copy fasta	NRBF2	chr10	63128328	63160024
NRBF2_chr10_63128328_63160024	0/0	t0002	948	125	16	21	65	7	16	copy fasta	NRBF2	chr10	63128328	63160024
NRBF2_chr10_63128328_63160024	0/0	t0003	950	49	0	5	42	1	1	copy fasta	NRBF2	chr10	63128328	63160024
NRBF2_chr10_63128328_63160024	0/0	t0004	950	29	3	13	2	5	6	copy fasta	NRBF2	chr10	63128328	63160024
NRBF2_chr10_63128328_63160024	0/0	t0005	951	9	8	1	0	0	0	copy fasta	NRBF2	chr10	63128328	63160024
NRBF2_chr10_63128328_63160024	0/0	t0006	950	2	0	0	1	0	1	copy fasta	NRBF2	chr10	63128328	63160024
NRBF2_chr10_63128328_63160024	0/0	t0007	948	1	0	0	1	0	0	copy fasta	NRBF2	chr10	63128328	63160024
NRBF2_chr10_63128328_63160024	0/0	t0008	950	1	1	0	0	0	0	copy fasta	NRBF2	chr10	63128328	63160024
NRBF2_chr10_63128328_63160024	0/0	t0009	948	1	0	0	1	0	0	copy fasta	NRBF2	chr10	63128328	63160024
NRBP1_chr2_27423631_27447259	1/1	t0001	569	263	74	57	82	12	36	copy fasta	NRBP1	chr2	27423631	27447259
NRBP1_chr2_27423631_27447259	0/0	t0002	569	3	3	0	0	0	0	copy fasta	NRBP1	chr2	27423631	27447259
NRBP1_chr2_27423631_27447259	0/0	t0003	569	3	3	0	0	0	0	copy fasta	NRBP1	chr2	27423631	27447259
NRBP1_chr2_27423631_27447259	0/0	t0004	569	2	2	0	0	0	0	copy fasta	NRBP1	chr2	27423631	27447259
NRBP1_chr2_27423631_27447259	0/0	t0005	569	1	0	1	0	0	0	copy fasta	NRBP1	chr2	27423631	27447259
NRBP1_chr2_27423631_27447259	0/0	t0006	569	1	0	0	1	0	0	copy fasta	NRBP1	chr2	27423631	27447259
NRBP1_chr2_27423631_27447259	0/0	t0007	569	1	0	0	1	0	0	copy fasta	NRBP1	chr2	27423631	27447259
NRBP1_chr2_27423631_27447259	0/0	t0008	569	1	1	0	0	0	0	copy fasta	NRBP1	chr2	27423631	27447259
NRBP1_chr2_27423631_27447259	0/0	t0009	569	1	1	0	0	0	0	copy fasta	NRBP1	chr2	27423631	27447259