JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NRBP2_chr8_143828583_143845973	1/1	t0001	2219	199	52	31	98	5	11	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	t0002	2219	103	12	7	65	0	19	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	t0003	2219	51	2	28	1	7	13	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	t0004	2219	11	11	0	0	0	0	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	t0005	2219	8	8	0	0	0	0	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	t0006	2219	6	4	2	0	0	0	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	t0007	2219	5	0	0	5	0	0	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	t0008	2219	4	0	0	4	0	0	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	t0009	2219	2	2	0	0	0	0	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	t0010	2219	1	1	0	0	0	0	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	t0011	2219	1	0	0	1	0	0	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	t0012	2219	1	0	0	1	0	0	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	t0013	2219	1	0	0	1	0	0	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	t0014	2219	1	0	1	0	0	0	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	t0015	2219	1	0	1	0	0	0	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	t0016	2219	1	1	0	0	0	0	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	t0017	2219	1	0	0	1	0	0	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	t0018	2219	1	0	0	0	0	1	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	t0019	2219	1	1	0	0	0	0	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	t0020	2219	1	0	0	1	0	0	copy fasta	NRBP2	chr8	143828583	143845973
NRCAM_chr7_108142649_108461436	0/0	t0001	2787	63	11	15	23	3	11	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/1	t0002	2787	45	17	12	3	1	11	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	t0003	2787	29	13	4	7	0	5	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	t0004	2787	26	9	3	11	1	2	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	t0005	2787	8	3	3	0	0	2	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	t0006	2787	7	7	0	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	1/0	t0007	2787	6	0	4	0	0	1	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	t0008	2787	5	5	0	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	t0009	2787	3	0	0	1	0	2	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	t0010	2787	2	2	0	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	t0011	2787	2	0	2	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	t0012	2787	2	0	0	2	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	t0013	2787	2	2	0	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	t0014	2787	1	1	0	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	t0015	2787	1	0	1	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	t0016	2787	1	1	0	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	t0017	2787	1	1	0	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	t0018	2787	1	1	0	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	t0019	2787	1	1	0	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	t0020	2787	1	0	0	0	1	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	t0021	2787	1	0	0	1	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRDC_chr1_51784210_51883727	1/1	t0001	139	239	89	44	62	6	36	copy fasta	NRDC	chr1	51784210	51883727
NRDC_chr1_51784210_51883727	0/0	t0002	135	4	4	0	0	0	0	copy fasta	NRDC	chr1	51784210	51883727
NRDC_chr1_51784210_51883727	0/0	t0003	139	1	1	0	0	0	0	copy fasta	NRDC	chr1	51784210	51883727
NRDE2_chr14_90262860_90336941	0/0	t0001	10493	29	1	9	12	1	6	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0002	10491	29	0	3	25	0	1	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0003	10513	11	4	3	4	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0004	10524	11	1	1	5	1	3	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0005	10522	9	0	0	6	2	1	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0006	10489	8	4	2	2	0	0	copy fasta	NRDE2	chr14	90262860	90336941