JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NRDE2_chr14_90262860_90336941	0/0	t0007	10489	8	8	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0008	10514	7	0	2	4	1	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0009	10515	7	1	1	3	1	1	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0010	10510	6	5	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0011	10526	6	0	2	4	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0012	10528	6	0	2	4	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0013	10491	5	5	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0014	10511	5	5	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0015	10517	5	0	2	2	0	1	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0016	10517	5	0	2	1	0	2	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0017	10494	4	0	2	1	0	1	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0018	10516	4	1	1	2	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0019	10526	4	0	1	3	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0020	10528	4	0	0	3	0	1	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0021	10489	3	0	1	0	0	2	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0022	10508	3	3	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0023	10518	3	3	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0024	10520	3	3	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0025	10513	3	0	0	3	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0026	10523	3	1	1	0	1	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0027	10525	3	2	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0028	10489	3	0	3	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0029	10520	3	2	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0030	10530	3	0	2	0	1	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0031	10493	2	2	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0032	10489	2	2	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0033	10489	2	2	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0034	10489	2	0	1	0	0	1	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0035	10491	2	0	1	0	0	1	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0036	10516	2	2	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0037	10506	2	1	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	1/0	t0038	10514	2	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0039	10516	2	2	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0040	10514	2	0	0	0	0	2	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0041	10510	2	0	2	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0042	10512	2	0	2	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0043	10521	2	0	0	2	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0044	10491	2	0	2	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0045	10492	2	0	0	2	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0046	10528	2	0	1	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0047	10520	2	0	0	1	0	1	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0048	10524	2	0	0	2	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0049	10523	2	0	2	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0050	10532	2	0	1	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0051	10524	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0052	10495	1	0	0	0	0	1	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0053	10494	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0054	10493	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0055	10493	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0056	10493	1	0	0	0	0	1	copy fasta	NRDE2	chr14	90262860	90336941