JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NRDE2_chr14_90262860_90336941	0/0	t0057	10492	1	0	0	0	1	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0058	10490	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0059	10510	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0060	10496	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0061	10492	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0062	10490	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0063	10500	1	0	0	0	0	1	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0064	10489	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0065	10492	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0066	10491	1	0	0	0	0	1	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0067	10491	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0068	10491	1	0	0	0	0	1	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0069	10518	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0070	10499	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0071	10508	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0072	10514	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0073	10508	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0074	10512	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0075	10526	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0076	10520	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0077	10522	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0078	10526	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0079	10516	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0080	10515	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0081	10510	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0082	10512	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0083	10513	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0084	10515	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0085	10516	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0086	10516	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0087	10518	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0088	10518	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0089	10490	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0090	10512	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0091	10516	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0092	10518	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0093	10512	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0094	10518	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0095	10520	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0096	10516	1	0	0	0	0	1	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0097	10511	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0098	10516	1	0	0	0	1	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0099	10525	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0100	10514	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0101	10513	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0102	10490	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0103	10490	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0104	10491	1	0	0	0	0	1	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0105	10490	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0106	10512	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941