Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARPC5L_chr9_124857130_124882733	0/0	t0023	2047	1	0	0	1	0	0	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5L_chr9_124857130_124882733	0/0	t0024	2041	1	0	0	1	0	0	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5L_chr9_124857130_124882733	0/0	t0025	2046	1	0	1	0	0	0	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5L_chr9_124857130_124882733	0/0	t0026	2046	1	1	0	0	0	0	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5L_chr9_124857130_124882733	0/0	t0027	2046	1	0	0	1	0	0	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5_chr1_183615846_183640783	1/0	t0001	6811	151	23	32	74	3	18	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0002	6805	53	6	14	21	4	8	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0003	6805	41	13	13	10	1	4	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0004	6790	17	7	2	6	0	2	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0005	6805	15	15	0	0	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0006	6811	9	0	0	9	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0007	6805	7	5	2	0	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0008	6805	7	0	0	7	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0009	6805	5	5	0	0	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0010	6811	4	0	0	4	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0011	6803	3	2	1	0	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0012	6790	3	3	0	0	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0013	6790	3	3	0	0	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0014	6811	3	0	0	3	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0015	6805	3	3	0	0	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0016	6790	2	2	0	0	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0017	6790	2	2	0	0	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0018	6809	2	0	0	2	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0019	6811	2	0	0	1	0	1	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0020	6811	2	0	0	2	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0021	6790	1	1	0	0	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0022	6810	1	0	1	0	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0023	6805	1	0	0	1	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0024	6805	1	0	0	0	0	1	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0025	6805	1	0	1	0	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0026	6800	1	0	0	0	0	1	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0027	6805	1	1	0	0	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0028	6811	1	1	0	0	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0029	6805	1	0	0	1	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0030	6800	1	0	1	0	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0031	6804	1	0	0	1	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0032	6805	1	0	0	1	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0033	6805	1	1	0	0	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0034	6805	1	1	0	0	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0035	6790	1	1	0	0	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0036	6790	1	1	0	0	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0037	6790	1	1	0	0	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0038	6811	1	0	0	1	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0039	6811	1	0	0	0	1	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0040	6811	1	0	0	0	0	1	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0041	6810	1	0	0	0	1	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0042	6811	1	0	0	1	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0043	6811	1	0	0	1	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0044	6564	1	0	0	0	0	1	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/1	t0045	6811	1	0	0	0	0	0	copy fasta	ARPC5	chr1	183615846	183640783