JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NRDE2_chr14_90262860_90336941	0/0	t0107	10509	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0108	10509	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0109	10491	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0110	10524	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0111	10529	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0112	10529	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0113	10529	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0114	10524	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0115	10541	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0116	10522	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0117	10525	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0118	10522	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0119	10523	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0120	10526	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0121	10525	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0122	10528	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0123	10559	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0124	10534	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0125	10542	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0126	10514	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0127	10522	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0128	10521	1	0	0	0	0	1	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0129	10525	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0130	10526	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0131	10517	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0132	10528	1	0	0	0	0	1	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0133	10531	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0134	10532	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/1	t0135	10532	1	0	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0136	10534	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0137	10533	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0138	10536	1	0	0	0	0	1	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0139	10536	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0140	10542	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0141	10516	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0142	10535	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0143	10525	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0144	10531	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0145	10526	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0146	10522	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0147	10528	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0148	10522	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0149	10520	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0150	10522	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	t0151	10524	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NREP_chr5_111724303_111762194	0/0	t0001	1738	98	5	21	56	1	15	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0002	1740	80	12	6	59	0	3	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	1/0	t0003	1736	62	4	5	40	3	9	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0004	1736	50	14	13	13	5	5	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0005	1745	27	23	4	0	0	0	copy fasta	NREP	chr5	111724303	111762194