JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NREP_chr5_111724303_111762194	0/0	t0006	1740	24	5	5	13	1	0	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0007	1746	11	6	0	0	0	5	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0008	1738	11	1	0	9	0	1	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0009	1741	9	5	2	1	0	1	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0010	1742	9	6	0	2	0	1	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0011	1737	8	1	2	0	2	3	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0012	1746	4	0	4	0	0	0	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0013	1740	3	0	3	0	0	0	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0014	1744	3	3	0	0	0	0	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0015	1740	3	2	0	1	0	0	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0016	1736	3	1	1	1	0	0	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0017	1741	3	2	0	1	0	0	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0018	1737	3	0	0	3	0	0	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0019	1742	3	0	0	3	0	0	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0020	1738	2	0	1	0	0	1	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0021	1745	2	1	1	0	0	0	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0022	1744	2	1	1	0	0	0	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0023	1740	2	0	0	2	0	0	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0024	1740	1	1	0	0	0	0	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0025	1740	1	0	0	1	0	0	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0026	1740	1	0	0	1	0	0	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0027	1741	1	1	0	0	0	0	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0028	1741	1	1	0	0	0	0	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0029	1736	1	0	0	1	0	0	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0030	1736	1	0	1	0	0	0	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0031	1742	1	1	0	0	0	0	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0032	1738	1	0	0	1	0	0	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0033	1736	1	0	0	1	0	0	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	t0034	1740	1	0	0	1	0	0	copy fasta	NREP	chr5	111724303	111762194
NRF1_chr7_129606720_129762076	0/0	t0001	2005	131	35	27	50	4	15	copy fasta	NRF1	chr7	129606720	129762076
NRF1_chr7_129606720_129762076	0/1	t0002	2003	110	22	15	61	1	10	copy fasta	NRF1	chr7	129606720	129762076
NRF1_chr7_129606720_129762076	0/0	t0003	2003	51	8	13	19	4	7	copy fasta	NRF1	chr7	129606720	129762076
NRF1_chr7_129606720_129762076	0/0	t0004	2005	36	1	8	18	3	6	copy fasta	NRF1	chr7	129606720	129762076
NRF1_chr7_129606720_129762076	0/0	t0005	2005	29	3	5	18	1	2	copy fasta	NRF1	chr7	129606720	129762076
NRF1_chr7_129606720_129762076	0/0	t0006	2003	6	0	0	6	0	0	copy fasta	NRF1	chr7	129606720	129762076
NRF1_chr7_129606720_129762076	1/0	t0007	2007	6	3	2	0	0	0	copy fasta	NRF1	chr7	129606720	129762076
NRF1_chr7_129606720_129762076	0/0	t0008	2003	4	4	0	0	0	0	copy fasta	NRF1	chr7	129606720	129762076
NRF1_chr7_129606720_129762076	0/0	t0009	2003	2	2	0	0	0	0	copy fasta	NRF1	chr7	129606720	129762076
NRF1_chr7_129606720_129762076	0/0	t0010	2007	1	0	0	1	0	0	copy fasta	NRF1	chr7	129606720	129762076
NRF1_chr7_129606720_129762076	0/0	t0011	2005	1	0	0	1	0	0	copy fasta	NRF1	chr7	129606720	129762076
NRF1_chr7_129606720_129762076	0/0	t0012	2005	1	0	0	0	1	0	copy fasta	NRF1	chr7	129606720	129762076
NRF1_chr7_129606720_129762076	0/0	t0013	2005	1	0	0	1	0	0	copy fasta	NRF1	chr7	129606720	129762076
NRF1_chr7_129606720_129762076	0/0	t0014	2005	1	0	1	0	0	0	copy fasta	NRF1	chr7	129606720	129762076
NRF1_chr7_129606720_129762076	0/0	t0015	2005	1	0	0	1	0	0	copy fasta	NRF1	chr7	129606720	129762076
NRF1_chr7_129606720_129762076	0/0	t0016	2005	1	1	0	0	0	0	copy fasta	NRF1	chr7	129606720	129762076
NRF1_chr7_129606720_129762076	0/0	t0017	2005	1	1	0	0	0	0	copy fasta	NRF1	chr7	129606720	129762076
NRF1_chr7_129606720_129762076	0/0	t0018	2003	1	0	1	0	0	0	copy fasta	NRF1	chr7	129606720	129762076
NRG1_chr8_32543311_32779046	0/0	t0001	10030	7	0	3	4	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0002	10037	6	1	2	3	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0003	10031	5	0	5	0	0	0	copy fasta	NRG1	chr8	32543311	32779046