JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NRG1_chr8_32543311_32779046	0/0	t0004	10026	4	4	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0005	10031	4	1	0	2	1	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0006	10030	4	2	1	0	0	1	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0007	10031	4	1	0	2	0	1	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0008	10037	3	0	0	1	1	1	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0009	10039	3	0	0	0	2	1	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0010	10031	3	0	2	0	1	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0011	10035	3	3	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0012	10030	3	0	0	3	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0013	10033	3	3	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0014	10032	3	0	0	3	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0015	10031	2	0	0	1	1	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0016	10031	2	1	0	0	0	1	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0017	10031	2	0	2	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0018	10032	2	0	0	1	0	1	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0019	10031	2	0	1	1	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0020	10031	2	0	0	2	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0021	10031	2	0	2	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0022	10033	2	0	0	2	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0023	10038	2	0	1	1	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0024	10040	2	2	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0025	10031	2	0	1	0	0	1	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0026	10029	2	2	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0027	10030	2	1	0	0	1	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0028	10032	2	0	0	2	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0029	10028	2	0	0	0	0	2	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0030	10032	2	0	0	2	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0031	10033	2	2	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0032	10037	2	0	0	2	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0033	10039	2	0	0	2	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0034	10029	2	2	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0035	10030	2	0	0	0	0	2	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0036	10060	1	1	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0037	10030	1	0	1	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0038	10036	1	0	0	0	1	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0039	10037	1	0	0	0	0	1	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0040	10040	1	0	1	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0041	10036	1	0	0	0	0	1	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0042	10038	1	0	1	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0043	10037	1	0	1	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0044	10031	1	1	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0045	10039	1	0	0	0	0	1	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0046	10038	1	0	0	0	0	1	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0047	10039	1	0	1	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0048	10035	1	1	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0049	10040	1	0	1	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0050	10036	1	1	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0051	10023	1	0	0	0	0	1	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0052	10027	1	1	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0053	10031	1	0	0	0	0	1	copy fasta	NRG1	chr8	32543311	32779046