JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NRG1_chr8_32543311_32779046	0/0	t0154	10040	1	0	1	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0155	10035	1	1	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0156	10034	1	0	0	0	0	1	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0157	10030	1	0	0	1	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0158	10038	1	1	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0159	10035	1	0	1	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0160	10039	1	0	1	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0161	10038	1	0	0	0	1	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0162	10040	1	1	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0163	10036	1	1	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0164	10031	1	1	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0165	10031	1	1	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0166	10033	1	0	0	1	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0167	10030	1	0	1	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0168	10029	1	1	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0169	10031	1	0	0	0	0	1	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0170	10031	1	0	1	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0171	10032	1	1	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0172	10032	1	1	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0173	10062	1	1	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0174	10059	1	1	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0175	10030	1	0	0	1	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0176	10030	1	0	0	0	0	1	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	1/0	t0177	10061	1	0	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0178	10063	1	1	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0179	10060	1	0	0	1	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0180	10061	1	0	0	0	0	1	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0181	10031	1	0	0	1	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	t0182	10076	1	0	1	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG2_chr5_139841781_140048299	1/1	t0001	1367	149	37	38	47	7	18	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	t0002	1367	15	2	5	5	1	2	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	t0003	1366	13	10	1	1	0	1	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	t0004	1367	3	3	0	0	0	0	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	t0005	1367	3	3	0	0	0	0	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	t0006	1367	1	0	0	0	0	1	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	t0007	1367	1	0	0	1	0	0	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	t0008	1367	1	1	0	0	0	0	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	t0009	1367	1	1	0	0	0	0	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	t0010	1367	1	1	0	0	0	0	copy fasta	NRG2	chr5	139841781	140048299
NRG3_chr10_81870194_82992178	0/0	t0001	1721	23	7	7	5	1	3	copy fasta	NRG3	chr10	81870194	82992178
NRG3_chr10_81870194_82992178	0/0	t0002	1721	15	8	3	3	0	1	copy fasta	NRG3	chr10	81870194	82992178
NRG3_chr10_81870194_82992178	0/0	t0003	1721	9	7	0	0	1	1	copy fasta	NRG3	chr10	81870194	82992178
NRG3_chr10_81870194_82992178	0/0	t0004	1721	9	6	2	0	0	1	copy fasta	NRG3	chr10	81870194	82992178
NRG3_chr10_81870194_82992178	0/0	t0005	1721	6	6	0	0	0	0	copy fasta	NRG3	chr10	81870194	82992178
NRG3_chr10_81870194_82992178	0/0	t0006	1721	2	2	0	0	0	0	copy fasta	NRG3	chr10	81870194	82992178
NRG3_chr10_81870194_82992178	0/0	t0007	1721	1	1	0	0	0	0	copy fasta	NRG3	chr10	81870194	82992178
NRG3_chr10_81870194_82992178	0/0	t0008	1721	1	1	0	0	0	0	copy fasta	NRG3	chr10	81870194	82992178
NRG4_chr15_75935936_76017424	0/0	t0001	2869	104	11	20	52	5	16	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/1	t0002	2868	64	15	4	34	4	6	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0003	2867	57	6	8	31	4	8	copy fasta	NRG4	chr15	75935936	76017424