JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NRG4_chr15_75935936_76017424	0/0	t0004	2868	30	0	3	26	0	1	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0005	2870	22	4	3	13	0	2	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0006	2868	12	0	8	3	0	1	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0007	2865	7	5	1	1	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0008	2869	6	0	3	3	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0009	2866	6	5	1	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0010	2848	4	4	0	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0011	2868	4	4	0	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0012	2865	3	0	3	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0013	2871	3	3	0	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0014	2865	3	1	1	0	1	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0015	2869	3	1	0	2	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0016	2847	2	2	0	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0017	2869	2	0	2	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0018	2870	2	0	0	2	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0019	2871	2	2	0	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0020	2869	2	0	1	1	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0021	2868	2	2	0	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0022	2866	1	0	0	0	0	1	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0023	2869	1	1	0	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0024	2869	1	0	0	1	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0025	2868	1	1	0	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0026	2868	1	1	0	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0027	2868	1	0	0	1	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0028	2867	1	1	0	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0029	2869	1	1	0	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0030	2870	1	1	0	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0031	2866	1	1	0	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0032	2866	1	0	0	1	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0033	2867	1	1	0	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0034	2868	1	0	0	1	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0035	2869	1	0	0	1	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0036	2869	1	0	0	0	0	1	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0037	2869	1	0	1	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0038	2870	1	1	0	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0039	2867	1	1	0	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0040	2870	1	0	1	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0041	2866	1	1	0	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0042	2865	1	1	0	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0043	2867	1	0	0	1	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0044	2867	1	1	0	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	1/0	t0045	2865	1	0	0	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0046	2867	1	1	0	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0047	2848	1	1	0	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0048	2848	1	1	0	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	t0049	2868	1	1	0	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRGN_chr11_124734942_124752210	1/1	t0001	974	382	87	66	170	12	45	copy fasta	NRGN	chr11	124734942	124752210
NRGN_chr11_124734942_124752210	0/0	t0002	974	2	0	2	0	0	0	copy fasta	NRGN	chr11	124734942	124752210
NRGN_chr11_124734942_124752210	0/0	t0003	974	2	0	0	2	0	0	copy fasta	NRGN	chr11	124734942	124752210
NRGN_chr11_124734942_124752210	0/0	t0004	974	1	1	0	0	0	0	copy fasta	NRGN	chr11	124734942	124752210