JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NRGN_chr11_124734942_124752210	0/0	t0005	974	1	0	0	1	0	0	copy fasta	NRGN	chr11	124734942	124752210
NRGN_chr11_124734942_124752210	0/0	t0006	974	1	0	0	1	0	0	copy fasta	NRGN	chr11	124734942	124752210
NRGN_chr11_124734942_124752210	0/0	t0007	974	1	1	0	0	0	0	copy fasta	NRGN	chr11	124734942	124752210
NRGN_chr11_124734942_124752210	0/0	t0008	974	1	1	0	0	0	0	copy fasta	NRGN	chr11	124734942	124752210
NRGN_chr11_124734942_124752210	0/0	t0009	974	1	1	0	0	0	0	copy fasta	NRGN	chr11	124734942	124752210
NRGN_chr11_124734942_124752210	0/0	t0010	974	1	0	0	0	0	1	copy fasta	NRGN	chr11	124734942	124752210
NRGN_chr11_124734942_124752210	0/0	t0011	974	1	1	0	0	0	0	copy fasta	NRGN	chr11	124734942	124752210
NRIP1_chr21_14956235_15070000	0/0	t0001	4266	102	32	14	44	6	6	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/1	t0002	4270	46	3	10	26	2	4	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0003	4268	46	0	0	39	0	7	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0004	4269	44	0	7	31	0	6	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	1/0	t0005	4275	26	1	6	7	4	7	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0006	4273	14	1	11	1	0	1	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0007	4269	12	0	2	10	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0008	4277	11	3	1	5	1	1	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0009	4272	8	5	2	1	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0010	4266	8	7	1	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0011	4268	8	8	0	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0012	4269	6	0	1	5	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0013	4265	5	5	0	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0014	4275	4	0	2	0	0	2	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0015	4266	4	0	3	0	0	1	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0016	4268	4	0	4	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0017	4265	4	4	0	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0018	4271	3	0	0	3	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0019	4266	3	3	0	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0020	4272	3	2	1	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0021	4269	2	0	2	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0022	4271	2	0	0	2	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0023	4266	2	2	0	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0024	4265	2	2	0	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0025	4281	2	2	0	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0026	4277	1	0	0	1	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0027	4268	1	0	0	1	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0028	4270	1	0	0	0	1	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0029	4273	1	0	1	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0030	4271	1	0	1	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0031	4269	1	0	0	1	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0032	4267	1	0	0	1	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0033	4269	1	0	0	1	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0034	4269	1	0	0	1	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0035	4264	1	0	1	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0036	4270	1	1	0	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0037	4270	1	0	0	1	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0038	4266	1	0	1	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0039	4270	1	1	0	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0040	4268	1	1	0	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0041	4274	1	1	0	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0042	4268	1	1	0	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0043	4274	1	1	0	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000