JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NRIP1_chr21_14956235_15070000	0/0	t0044	4268	1	0	0	1	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0045	4268	1	0	0	1	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0046	4266	1	1	0	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0047	4268	1	1	0	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0048	4271	1	0	1	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0049	4266	1	1	0	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0050	4266	1	0	0	0	0	1	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0051	4270	1	0	0	1	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	t0052	4283	1	1	0	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP2_chr12_2820348_2840035	1/1	t0001	1912	199	53	45	75	9	15	copy fasta	NRIP2	chr12	2820348	2840035
NRIP2_chr12_2820348_2840035	0/0	t0002	1914	89	12	10	61	0	6	copy fasta	NRIP2	chr12	2820348	2840035
NRIP2_chr12_2820348_2840035	0/0	t0003	1913	85	9	18	39	1	18	copy fasta	NRIP2	chr12	2820348	2840035
NRIP2_chr12_2820348_2840035	0/0	t0004	1912	14	0	0	13	0	1	copy fasta	NRIP2	chr12	2820348	2840035
NRIP2_chr12_2820348_2840035	0/0	t0005	1914	8	7	1	0	0	0	copy fasta	NRIP2	chr12	2820348	2840035
NRIP2_chr12_2820348_2840035	0/0	t0006	1912	7	0	0	7	0	0	copy fasta	NRIP2	chr12	2820348	2840035
NRIP2_chr12_2820348_2840035	0/0	t0007	1913	6	5	1	0	0	0	copy fasta	NRIP2	chr12	2820348	2840035
NRIP2_chr12_2820348_2840035	0/0	t0008	1913	2	2	0	0	0	0	copy fasta	NRIP2	chr12	2820348	2840035
NRIP2_chr12_2820348_2840035	0/0	t0009	1912	2	2	0	0	0	0	copy fasta	NRIP2	chr12	2820348	2840035
NRIP2_chr12_2820348_2840035	0/0	t0010	1911	2	1	0	1	0	0	copy fasta	NRIP2	chr12	2820348	2840035
NRIP2_chr12_2820348_2840035	0/0	t0011	1914	2	0	0	2	0	0	copy fasta	NRIP2	chr12	2820348	2840035
NRIP2_chr12_2820348_2840035	0/0	t0012	1913	1	1	0	0	0	0	copy fasta	NRIP2	chr12	2820348	2840035
NRIP2_chr12_2820348_2840035	0/0	t0013	1914	1	0	0	1	0	0	copy fasta	NRIP2	chr12	2820348	2840035
NRIP2_chr12_2820348_2840035	0/0	t0014	1914	1	0	0	1	0	0	copy fasta	NRIP2	chr12	2820348	2840035
NRIP2_chr12_2820348_2840035	0/0	t0015	1912	1	0	1	0	0	0	copy fasta	NRIP2	chr12	2820348	2840035
NRIP2_chr12_2820348_2840035	0/0	t0016	1912	1	1	0	0	0	0	copy fasta	NRIP2	chr12	2820348	2840035
NRIP2_chr12_2820348_2840035	0/0	t0017	1912	1	1	0	0	0	0	copy fasta	NRIP2	chr12	2820348	2840035
NRIP3_chr11_8975576_9009001	0/0	t0001	3037	95	16	7	63	0	9	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0002	3038	76	7	16	41	4	8	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0003	3035	38	1	2	26	2	7	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0004	3035	30	3	15	0	3	9	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0005	3037	23	9	0	14	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	1/0	t0006	3036	21	17	3	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/1	t0007	3039	10	1	4	4	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0008	3038	9	0	2	7	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0009	3037	8	8	0	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0010	3039	6	1	0	5	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0011	3037	6	0	1	4	1	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0012	3033	5	4	1	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0013	3038	5	0	2	0	0	3	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0014	3037	5	0	0	4	0	1	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0015	3036	5	1	0	3	0	1	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0016	3038	4	0	0	3	0	1	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0017	3038	4	1	0	2	0	1	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0018	3036	4	0	0	3	1	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0019	3034	3	2	1	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0020	3038	3	1	2	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0021	3036	3	3	0	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0022	3036	2	2	0	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0023	3035	2	2	0	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0024	3037	2	2	0	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001