JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NRIP3_chr11_8975576_9009001	0/0	t0025	3037	2	1	0	0	0	1	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0026	3034	2	0	1	1	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0027	3035	2	2	0	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0028	3036	2	2	0	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0029	3038	1	0	0	0	1	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0030	3036	1	0	1	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0031	3035	1	1	0	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0032	3038	1	0	0	1	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0033	3038	1	1	0	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0034	3039	1	0	0	1	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0035	3038	1	0	0	1	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0036	3039	1	0	0	1	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0037	3036	1	0	0	0	0	1	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0038	3038	1	1	0	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0039	3038	1	0	0	1	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0040	3038	1	0	1	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0041	3037	1	1	0	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0042	3038	1	0	0	1	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0043	3051	1	0	0	1	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0044	3037	1	0	0	1	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0045	3035	1	0	0	1	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0046	3036	1	0	1	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0047	3037	1	0	0	1	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0048	3037	1	0	0	1	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0049	3035	1	1	0	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0050	3036	1	1	0	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0051	3036	1	0	0	0	0	1	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0052	3035	1	0	1	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0053	3035	1	0	0	0	0	1	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0054	3036	1	0	1	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0055	3370	1	1	0	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0056	3037	1	1	0	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	t0057	3038	1	0	0	1	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRK_chrX_105817539_105963610	1/0	t0001	3318	106	5	20	61	2	17	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	t0002	3318	41	8	11	12	1	9	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	t0003	3318	37	35	2	0	0	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/1	t0004	3318	18	12	4	0	1	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	t0005	3318	9	7	0	2	0	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	t0006	3318	1	0	1	0	0	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	t0007	3317	1	0	0	1	0	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	t0008	3317	1	0	0	1	0	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	t0009	3317	1	0	0	0	1	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	t0010	3316	1	1	0	0	0	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	t0011	3318	1	1	0	0	0	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	t0012	3318	1	1	0	0	0	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	t0013	3317	1	0	1	0	0	0	copy fasta	NRK	chrX	105817539	105963610
NRL_chr14_24073662_24119949	1/1	t0001	2830	135	38	24	57	7	7	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0002	2830	122	7	27	71	1	16	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0003	2830	38	21	7	1	2	7	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0004	2830	17	0	2	14	0	1	copy fasta	NRL	chr14	24073662	24119949