Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARPC5_chr1_183615846_183640783	0/0	t0046	6811	1	0	0	0	0	1	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0047	6811	1	0	1	0	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0048	6811	1	0	0	1	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0049	6811	1	1	0	0	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	t0050	6806	1	0	0	1	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPIN_chr15_89890006_89917952	0/0	t0001	6900	60	2	10	40	4	4	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0002	6900	58	30	10	12	0	6	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0003	6907	40	0	11	16	3	10	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0004	6906	33	2	7	19	1	4	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0005	6906	29	13	11	2	1	2	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0006	6900	26	0	0	25	1	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0007	6900	20	0	1	16	0	3	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0008	6907	16	16	0	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0009	6900	9	0	8	1	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0010	6900	7	1	4	0	1	1	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0011	6907	6	1	1	1	0	3	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0012	6906	5	5	0	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0013	6908	5	0	0	5	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0014	6908	5	0	1	4	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0015	6903	4	4	0	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0016	6900	4	1	2	0	1	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0017	6901	3	3	0	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0018	6906	3	2	1	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0019	6901	3	0	1	1	1	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0020	6908	3	0	0	3	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0021	6905	3	0	3	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0022	6901	2	2	0	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0023	6900	2	1	1	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0024	6900	2	2	0	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0025	6900	2	0	0	2	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0026	6905	2	0	0	1	0	1	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0027	6917	2	1	1	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0028	6907	2	0	0	2	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0029	6899	2	0	0	2	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0030	6907	2	0	0	0	2	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/1	t0031	6908	2	0	0	1	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0032	6907	2	0	0	2	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0033	6906	2	0	0	2	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0034	6906	2	0	0	2	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0035	6900	1	0	0	1	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0036	6900	1	0	0	1	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0037	6901	1	0	1	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0038	6900	1	1	0	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0039	6900	1	0	1	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0040	6900	1	1	0	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0041	6900	1	1	0	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0042	6900	1	0	1	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0043	6899	1	0	0	1	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0044	6899	1	1	0	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0045	6908	1	0	1	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952