JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NRL_chr14_24073662_24119949	0/0	t0005	2830	11	0	1	8	0	2	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0006	2830	6	6	0	0	0	0	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0007	2830	5	5	0	0	0	0	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0008	2830	5	1	1	2	0	1	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0009	2830	3	0	1	0	2	0	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0010	2830	2	2	0	0	0	0	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0011	2830	2	0	1	1	0	0	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0012	2830	2	0	0	0	0	2	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0013	2830	2	0	0	2	0	0	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0014	2830	2	2	0	0	0	0	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0015	2830	2	0	0	0	0	2	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0016	2830	2	2	0	0	0	0	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0017	2830	1	1	0	0	0	0	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0018	2830	1	0	0	1	0	0	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0019	2830	1	1	0	0	0	0	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0020	2830	1	0	0	1	0	0	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0021	2813	1	0	0	1	0	0	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0022	2830	1	0	1	0	0	0	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0023	2830	1	1	0	0	0	0	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0024	2830	1	1	0	0	0	0	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0025	2830	1	1	0	0	0	0	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0026	2830	1	1	0	0	0	0	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0027	2830	1	1	0	0	0	0	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0028	2830	1	0	0	1	0	0	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0029	2830	1	0	0	1	0	0	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0030	2830	1	0	1	0	0	0	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0031	2830	1	1	0	0	0	0	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0032	2830	1	0	0	1	0	0	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0033	2830	1	1	0	0	0	0	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0034	2830	1	1	0	0	0	0	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0035	2830	1	0	0	0	0	1	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	t0036	2830	1	0	0	0	0	1	copy fasta	NRL	chr14	24073662	24119949
NRM_chr6_30683049_30695984	0/1	t0001	623	359	71	75	150	17	45	copy fasta	NRM	chr6	30683049	30695984
NRM_chr6_30683049_30695984	0/0	t0002	623	30	0	4	24	1	1	copy fasta	NRM	chr6	30683049	30695984
NRM_chr6_30683049_30695984	0/0	t0003	623	20	0	0	18	0	2	copy fasta	NRM	chr6	30683049	30695984
NRM_chr6_30683049_30695984	0/0	t0004	623	17	5	2	10	0	0	copy fasta	NRM	chr6	30683049	30695984
NRM_chr6_30683049_30695984	0/0	t0005	623	8	6	2	0	0	0	copy fasta	NRM	chr6	30683049	30695984
NRM_chr6_30683049_30695984	0/0	t0006	623	5	4	1	0	0	0	copy fasta	NRM	chr6	30683049	30695984
NRM_chr6_30683049_30695984	0/0	t0007	623	3	0	0	3	0	0	copy fasta	NRM	chr6	30683049	30695984
NRM_chr6_30683049_30695984	0/0	t0008	643	1	0	0	1	0	0	copy fasta	NRM	chr6	30683049	30695984
NRN1L_chr16_67879885_67891368	1/1	t0001	129	298	94	62	88	12	40	copy fasta	NRN1L	chr16	67879885	67891368
NRN1_chr6_5992999_6011925	1/0	t0001	1154	292	56	54	145	7	29	copy fasta	NRN1	chr6	5992999	6011925
NRN1_chr6_5992999_6011925	0/1	t0002	1153	160	38	27	72	8	14	copy fasta	NRN1	chr6	5992999	6011925
NRN1_chr6_5992999_6011925	0/0	t0003	1155	7	0	1	1	2	3	copy fasta	NRN1	chr6	5992999	6011925
NRN1_chr6_5992999_6011925	0/0	t0004	1154	2	0	0	2	0	0	copy fasta	NRN1	chr6	5992999	6011925
NRN1_chr6_5992999_6011925	0/0	t0005	1153	1	0	0	0	1	0	copy fasta	NRN1	chr6	5992999	6011925
NRP1_chr10_33172493_33339667	1/1	t0001	2869	60	4	15	24	2	13	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0002	2869	47	9	11	22	1	4	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0003	2870	44	5	2	28	1	8	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0004	2870	40	18	9	11	1	1	copy fasta	NRP1	chr10	33172493	33339667