JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NRP1_chr10_33172493_33339667	0/0	t0005	2869	21	18	1	0	0	2	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0006	2870	7	6	1	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0007	2870	5	2	2	0	1	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0008	2869	4	0	3	0	1	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0009	2870	4	0	2	0	1	1	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0010	2869	2	2	0	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0011	2870	2	2	0	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0012	2870	2	0	0	0	0	2	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0013	2869	2	0	0	2	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0014	2870	2	1	1	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0015	2870	2	0	0	2	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0016	2870	2	2	0	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0017	2870	1	1	0	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0018	2870	1	1	0	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0019	2870	1	0	0	0	0	1	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0020	2869	1	0	0	1	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0021	2869	1	0	0	1	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0022	2870	1	0	0	1	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0023	2870	1	1	0	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0024	2870	1	0	1	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0025	2870	1	1	0	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0026	2869	1	0	0	1	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0027	2869	1	0	1	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0028	2869	1	1	0	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0029	2870	1	0	1	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0030	2870	1	0	1	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0031	2869	1	0	1	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	t0032	2869	1	0	0	1	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP2_chr2_205677501_205803131	0/0	t0001	3867	43	4	11	23	1	4	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0002	3867	35	3	5	17	2	8	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0003	3861	28	0	5	23	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0004	3861	25	17	3	2	1	2	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0005	3873	22	0	2	18	1	1	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0006	3861	21	0	4	17	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0007	3867	19	8	9	0	1	1	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0008	3867	16	8	4	0	1	3	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0009	3870	13	3	2	1	3	4	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0010	3873	13	0	3	8	0	2	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0011	3861	12	9	1	1	0	1	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0012	3870	12	3	5	1	1	2	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	1/0	t0013	3864	9	5	1	0	1	1	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0014	3870	6	0	0	3	0	3	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0015	3870	5	0	1	3	0	1	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0016	3864	4	4	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0017	3864	3	3	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0018	3864	3	0	3	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0019	3867	3	0	3	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0020	3867	3	1	2	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0021	3873	3	1	0	2	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0022	3861	3	3	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131