JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NRP2_chr2_205677501_205803131	0/0	t0023	3867	3	0	1	0	2	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0024	3873	2	0	0	1	0	1	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0025	3876	2	0	1	0	0	1	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0026	3867	2	1	0	0	1	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0027	3876	2	0	1	1	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0028	3861	2	2	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0029	3861	2	1	1	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0030	3867	2	2	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0031	3867	1	0	1	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/1	t0032	3861	1	0	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0033	3870	1	0	1	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0034	3861	1	0	0	1	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0035	3861	1	1	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0036	3861	1	1	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0037	3861	1	0	1	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0038	3864	1	1	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0039	3864	1	1	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0040	3867	1	0	1	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0041	3870	1	0	0	1	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0042	3873	1	1	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0043	3861	1	1	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0044	3870	1	0	0	1	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0045	3861	1	0	0	1	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0046	3876	1	1	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0047	3867	1	1	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0048	3861	1	1	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0049	3861	1	1	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0050	3864	1	0	0	1	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0051	3864	1	1	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0052	3867	1	0	0	0	0	1	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0053	3867	1	0	0	1	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0054	3867	1	1	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0055	3870	1	0	0	1	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0056	3870	1	0	0	0	1	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0057	3870	1	0	1	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0058	3854	1	0	1	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0059	3873	1	0	0	1	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0060	3873	1	0	0	1	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0061	3861	1	1	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0062	3867	1	1	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0063	3864	1	1	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	t0064	3867	1	1	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRROS_chr3_196634694_196667004	1/0	t0001	478	275	44	44	147	13	26	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/1	t0002	478	127	43	30	31	5	17	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/0	t0003	478	39	4	8	27	0	0	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/0	t0004	478	15	2	4	4	0	5	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/0	t0005	478	9	0	0	9	0	0	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/0	t0006	478	3	3	0	0	0	0	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/0	t0007	478	1	1	0	0	0	0	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/0	t0008	478	1	0	0	1	0	0	copy fasta	NRROS	chr3	196634694	196667004