JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NRROS_chr3_196634694_196667004	0/0	t0009	442	1	0	0	1	0	0	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/0	t0010	478	1	1	0	0	0	0	copy fasta	NRROS	chr3	196634694	196667004
NRSN1_chr6_24121215_24152530	0/0	t0001	1793	97	10	22	50	8	7	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0002	1793	79	6	13	49	1	10	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	1/0	t0003	1793	48	36	7	0	0	4	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0004	1795	31	0	3	21	1	6	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/1	t0005	1794	21	0	3	13	2	2	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0006	1792	21	5	5	4	3	4	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0007	1793	10	2	2	6	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0008	1794	9	8	1	0	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0009	1793	8	1	1	3	0	3	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0010	1793	8	1	0	7	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0011	1793	8	6	2	0	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0012	1793	6	0	4	0	0	2	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0013	1793	5	0	4	0	1	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0014	1792	4	0	2	0	0	2	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0015	1794	3	0	1	2	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0016	1794	3	0	2	0	0	1	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0017	1794	3	0	0	2	0	1	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0018	1796	2	0	0	2	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0019	1793	2	2	0	0	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0020	1793	2	2	0	0	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0021	1793	2	2	0	0	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0022	1792	2	2	0	0	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0023	1793	2	0	2	0	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0024	1793	2	0	0	2	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0025	1793	2	2	0	0	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0026	1793	1	1	0	0	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0027	1794	1	1	0	0	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0028	1793	1	1	0	0	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0029	1792	1	1	0	0	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0030	1793	1	0	1	0	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0031	1793	1	1	0	0	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0032	1793	1	0	0	1	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0033	1765	1	0	0	1	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0034	1793	1	0	0	1	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0035	1793	1	0	0	1	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0036	1795	1	0	0	1	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0037	1793	1	0	0	1	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0038	1793	1	0	0	1	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0039	1794	1	0	0	1	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0040	1794	1	0	0	1	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0041	1793	1	1	0	0	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0042	1794	1	0	0	1	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0043	1793	1	0	0	1	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0044	1794	1	1	0	0	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0045	1793	1	1	0	0	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0046	1793	1	1	0	0	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0047	1793	1	0	1	0	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0048	1793	1	1	0	0	0	0	copy fasta	NRSN1	chr6	24121215	24152530