JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NRSN1_chr6_24121215_24152530	0/0	t0049	1793	1	1	0	0	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0050	1792	1	1	0	0	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	t0051	1793	1	1	0	0	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN2_chr20_342111_359862	0/1	t0001	1459	338	44	62	169	16	46	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	t0002	1459	27	22	4	0	1	0	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	1/0	t0003	1460	9	2	5	0	1	0	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	t0004	1459	9	8	1	0	0	0	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	t0005	1460	6	6	0	0	0	0	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	t0006	1460	5	0	5	0	0	0	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	t0007	1459	5	5	0	0	0	0	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	t0008	1459	4	4	0	0	0	0	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	t0009	1459	2	2	0	0	0	0	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	t0010	1460	1	0	1	0	0	0	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	t0011	1459	1	1	0	0	0	0	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	t0012	1459	1	0	0	1	0	0	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	t0013	1459	1	1	0	0	0	0	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	t0014	1459	1	0	0	0	0	1	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	t0015	1459	1	0	0	0	0	1	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	t0016	1459	1	1	0	0	0	0	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	t0017	1459	1	1	0	0	0	0	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	t0018	1459	1	1	0	0	0	0	copy fasta	NRSN2	chr20	342111	359862
NRTN_chr19_5800067_5833324	0/1	t0001	937	232	39	57	88	11	36	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	t0002	937	95	2	23	64	1	5	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	t0003	937	16	15	1	0	0	0	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	t0004	938	12	0	1	5	1	5	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	t0005	937	10	10	0	0	0	0	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	t0006	937	8	8	0	0	0	0	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	t0007	936	5	3	2	0	0	0	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	t0008	936	4	4	0	0	0	0	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	t0009	937	3	3	0	0	0	0	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	t0010	937	2	2	0	0	0	0	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	t0011	937	2	2	0	0	0	0	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	1/0	t0012	935	1	0	0	0	0	0	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	t0013	937	1	1	0	0	0	0	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	t0014	936	1	0	0	0	1	0	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	t0015	937	1	0	0	1	0	0	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	t0016	937	1	0	0	1	0	0	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	t0017	937	1	1	0	0	0	0	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	t0018	937	1	0	0	0	0	1	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	t0019	936	1	1	0	0	0	0	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	t0020	936	1	1	0	0	0	0	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	t0021	936	1	1	0	0	0	0	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	t0022	937	1	0	0	0	0	1	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	t0023	938	1	0	0	1	0	0	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	t0024	938	1	1	0	0	0	0	copy fasta	NRTN	chr19	5800067	5833324
NRXN1_chr2_49913503_51037132	0/0	t0001	4511	11	7	1	2	1	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0002	4515	6	5	0	1	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0003	4509	6	2	2	1	0	1	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0004	4509	5	0	4	1	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0005	4501	5	3	1	0	1	0	copy fasta	NRXN1	chr2	49913503	51037132