JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NRXN1_chr2_49913503_51037132	0/0	t0006	4513	5	3	0	2	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0007	4502	3	0	0	3	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0008	4511	3	2	0	0	0	1	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0009	4509	3	1	2	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0010	4505	3	3	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0011	4509	3	0	0	2	1	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0012	4513	2	1	1	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0013	4515	2	2	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0014	4513	2	2	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0015	4507	2	1	0	1	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0016	4505	2	1	0	0	1	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0017	4501	2	1	1	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0018	4507	2	1	1	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0019	4515	2	0	1	1	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0020	4513	2	0	1	1	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0021	4501	1	0	0	0	0	1	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0022	4511	1	0	1	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0023	4507	1	0	0	0	0	1	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0024	4502	1	0	0	1	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0025	4509	1	0	1	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0026	4513	1	1	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0027	4511	1	0	1	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0028	4509	1	0	1	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0029	4515	1	0	0	1	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0030	4513	1	0	0	1	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0031	4509	1	0	0	1	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0032	4507	1	0	0	0	0	1	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0033	4517	1	0	1	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0034	4509	1	0	0	0	0	1	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0035	4517	1	1	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0036	4515	1	1	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0037	4501	1	0	0	1	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0038	4509	1	1	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0039	4519	1	0	1	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0040	4519	1	1	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0041	4515	1	1	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0042	4515	1	1	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0043	4513	1	1	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0044	4511	1	1	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0045	4507	1	1	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0046	4507	1	0	1	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0047	4503	1	1	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0048	4503	1	1	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0049	4501	1	1	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0050	4499	1	1	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0051	4517	1	1	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0052	4513	1	1	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0053	4507	1	0	0	0	0	1	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0054	4502	1	0	0	1	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0055	4516	1	1	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132