JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NRXN1_chr2_49913503_51037132	0/0	t0056	4509	1	1	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0057	4515	1	0	0	1	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0058	4502	1	0	0	0	0	1	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0059	4519	1	1	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0060	4513	1	0	1	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0061	4509	1	0	0	1	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0062	4501	1	0	1	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0063	4499	1	1	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0064	4513	1	0	0	1	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	t0065	4511	1	1	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN2_chr11_64601174_64728197	1/1	t0001	1494	208	38	40	94	10	24	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	t0002	1494	31	20	6	3	0	2	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	t0003	1494	29	1	1	27	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	t0004	1494	18	18	0	0	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	t0005	1494	5	0	1	0	1	3	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	t0006	1494	5	0	0	5	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	t0007	1494	3	2	1	0	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	t0008	1494	2	0	2	0	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	t0009	1494	1	1	0	0	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	t0010	1494	1	0	0	1	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	t0011	1494	1	0	0	0	0	1	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	t0012	1494	1	0	0	1	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	t0013	1494	1	0	1	0	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	t0014	1494	1	0	0	1	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	t0015	1494	1	0	0	0	1	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN3_chr14_78165373_79873291	0/0	t0001	7332	3	1	2	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NRXN3_chr14_78165373_79873291	0/0	t0002	7331	3	3	0	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NRXN3_chr14_78165373_79873291	0/0	t0003	7336	2	1	1	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NRXN3_chr14_78165373_79873291	0/0	t0004	7332	2	1	1	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NRXN3_chr14_78165373_79873291	0/0	t0005	7332	2	1	1	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NRXN3_chr14_78165373_79873291	0/0	t0006	7331	1	1	0	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NRXN3_chr14_78165373_79873291	0/0	t0007	7333	1	1	0	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NRXN3_chr14_78165373_79873291	0/0	t0008	7332	1	1	0	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NRXN3_chr14_78165373_79873291	0/0	t0009	7331	1	1	0	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NRXN3_chr14_78165373_79873291	0/0	t0010	7331	1	1	0	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NRXN3_chr14_78165373_79873291	0/0	t0011	7331	1	1	0	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NRXN3_chr14_78165373_79873291	0/0	t0012	7332	1	1	0	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NRXN3_chr14_78165373_79873291	0/0	t0013	7332	1	1	0	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NRXN3_chr14_78165373_79873291	0/0	t0014	7331	1	1	0	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NRXN3_chr14_78165373_79873291	0/0	t0015	7331	1	1	0	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NRXN3_chr14_78165373_79873291	0/0	t0016	7331	1	0	1	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NRXN3_chr14_78165373_79873291	0/0	t0017	7331	1	1	0	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NSA2_chr5_74762249_74785113	0/0	t0001	3555	111	15	26	43	5	22	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	1/0	t0002	3555	79	1	10	58	2	7	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	t0003	3554	73	19	16	34	0	4	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	t0004	3555	52	5	8	33	1	5	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/1	t0005	3557	39	15	14	0	4	5	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	t0006	3554	11	11	0	0	0	0	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	t0007	3553	11	11	0	0	0	0	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	t0008	3555	3	0	0	3	0	0	copy fasta	NSA2	chr5	74762249	74785113