JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NSA2_chr5_74762249_74785113	0/0	t0009	3549	3	3	0	0	0	0	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	t0010	3554	2	2	0	0	0	0	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	t0011	3554	2	0	2	0	0	0	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	t0012	3557	2	0	0	2	0	0	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	t0013	3554	1	1	0	0	0	0	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	t0014	3555	1	0	0	1	0	0	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	t0015	3555	1	1	0	0	0	0	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	t0016	3555	1	1	0	0	0	0	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	t0017	3555	1	0	0	1	0	0	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	t0018	3554	1	1	0	0	0	0	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	t0019	3554	1	0	0	1	0	0	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	t0020	3555	1	0	1	0	0	0	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	t0021	3555	1	0	0	1	0	0	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	t0022	3555	1	0	1	0	0	0	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	t0023	3555	1	0	0	0	0	1	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	t0024	3553	1	1	0	0	0	0	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	t0025	3554	1	0	0	1	0	0	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	t0026	3554	1	1	0	0	0	0	copy fasta	NSA2	chr5	74762249	74785113
NSD1_chr5_177128773_177305213	0/0	t0001	4953	38	3	4	24	1	6	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/1	t0002	4952	28	12	6	1	4	4	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	1/0	t0003	4952	25	2	6	15	0	1	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0004	4952	17	0	5	9	1	2	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0005	4953	14	9	4	0	1	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0006	4954	13	9	2	1	0	1	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0007	4949	12	11	1	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0008	4951	11	0	3	6	0	2	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0009	4952	9	3	1	2	0	3	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0010	4952	9	0	0	9	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0011	4951	8	5	1	0	1	1	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0012	4953	7	1	2	1	0	3	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0013	4953	6	0	2	2	0	2	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0014	4954	5	1	2	2	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0015	4952	4	4	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0016	4951	3	3	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0017	4953	3	0	1	2	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0018	4952	3	3	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0019	4954	3	0	0	3	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0020	4951	3	1	0	1	1	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0021	4952	3	3	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0022	4953	3	1	0	2	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0023	4953	3	0	0	3	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0024	4953	3	0	0	3	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0025	4953	2	0	1	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0026	4951	2	0	0	0	0	2	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0027	4952	2	2	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0028	4953	2	2	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0029	4953	2	0	0	2	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0030	4952	2	0	0	2	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0031	4952	2	0	1	0	1	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0032	4955	2	0	1	0	0	1	copy fasta	NSD1	chr5	177128773	177305213