JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NSD1_chr5_177128773_177305213	0/0	t0033	4951	2	0	0	2	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0034	4952	2	0	0	2	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0035	4951	1	0	1	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0036	4953	1	0	0	0	0	1	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0037	4955	1	1	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0038	4954	1	1	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0039	4954	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0040	4953	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0041	4953	1	0	0	0	0	1	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0042	4955	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0043	4952	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0044	4952	1	0	0	0	0	1	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0045	4953	1	1	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0046	4952	1	0	1	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0047	4954	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0048	4952	1	0	1	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0049	4949	1	1	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0050	4952	1	1	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0051	4952	1	1	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0052	4952	1	1	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0053	4952	1	0	1	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0054	4951	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0055	4954	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0056	4953	1	1	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0057	4953	1	1	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0058	4954	1	1	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0059	4952	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0060	4954	1	0	0	0	0	1	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0061	4953	1	1	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0062	4951	1	1	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0063	4953	1	0	0	0	0	1	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0064	4952	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0065	4952	1	1	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0066	4954	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0067	4954	1	0	1	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0068	4950	1	0	1	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0069	4955	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0070	4952	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0071	4953	1	0	0	0	0	1	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0072	4954	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0073	4954	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0074	4953	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0075	4953	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0076	4953	1	0	1	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0077	4952	1	1	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0078	4952	1	1	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	t0079	4953	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD2_chr4_1866393_1987192	1/1	t0001	3463	92	34	25	18	8	5	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	t0002	3463	8	6	1	0	0	1	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	t0003	3463	4	4	0	0	0	0	copy fasta	NSD2	chr4	1866393	1987192