JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NSD2_chr4_1866393_1987192	0/0	t0004	3463	3	2	1	0	0	0	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	t0005	3459	3	3	0	0	0	0	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	t0006	3469	3	2	1	0	0	0	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	t0007	3463	2	2	0	0	0	0	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	t0008	3463	1	0	0	1	0	0	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	t0009	3463	1	0	0	0	0	1	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	t0010	3463	1	0	0	1	0	0	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	t0011	3463	1	0	1	0	0	0	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	t0012	3459	1	1	0	0	0	0	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	t0013	3463	1	0	0	0	0	1	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	t0014	3463	1	1	0	0	0	0	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	t0015	3459	1	1	0	0	0	0	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	t0016	3463	1	1	0	0	0	0	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	t0017	3463	1	0	1	0	0	0	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	t0018	3463	1	1	0	0	0	0	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	t0019	3463	1	1	0	0	0	0	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	t0020	3463	1	1	0	0	0	0	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	t0021	3463	1	1	0	0	0	0	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	t0022	3469	1	1	0	0	0	0	copy fasta	NSD2	chr4	1866393	1987192
NSD3_chr8_38264704_38387271	1/1	t0001	6455	117	31	20	47	8	9	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	t0002	6455	76	7	15	46	6	2	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	t0003	6455	3	0	0	3	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	t0004	6456	3	0	0	3	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	t0005	6455	3	0	3	0	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	t0006	6455	3	0	0	2	0	1	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	t0007	6455	2	0	0	2	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	t0008	6455	1	1	0	0	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	t0009	6455	1	1	0	0	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	t0010	6455	1	1	0	0	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	t0011	6455	1	1	0	0	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	t0012	6455	1	0	0	0	0	1	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	t0013	6455	1	1	0	0	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	t0014	6455	1	0	0	1	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	t0015	6455	1	0	0	0	0	1	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	t0016	6455	1	1	0	0	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	t0017	6455	1	0	1	0	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	t0018	6455	1	1	0	0	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	t0019	6455	1	0	0	1	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	t0020	6455	1	0	1	0	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	t0021	6455	1	0	0	0	0	1	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	t0022	6455	1	0	1	0	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	t0023	6455	1	0	0	0	0	1	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	t0024	6455	1	0	1	0	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	t0025	6455	1	1	0	0	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	t0026	6455	1	0	0	1	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSDHL_chrX_152826063_152874729	1/1	t0001	712	267	56	38	136	6	29	copy fasta	NSDHL	chrX	152826063	152874729
NSDHL_chrX_152826063_152874729	0/0	t0002	712	42	14	14	7	3	4	copy fasta	NSDHL	chrX	152826063	152874729
NSDHL_chrX_152826063_152874729	0/0	t0003	712	3	0	0	3	0	0	copy fasta	NSDHL	chrX	152826063	152874729
NSDHL_chrX_152826063_152874729	0/0	t0004	712	2	2	0	0	0	0	copy fasta	NSDHL	chrX	152826063	152874729
NSDHL_chrX_152826063_152874729	0/0	t0005	712	2	2	0	0	0	0	copy fasta	NSDHL	chrX	152826063	152874729