Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARPIN_chr15_89890006_89917952	0/0	t0046	6907	1	0	1	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0047	6908	1	1	0	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0048	6907	1	0	0	0	0	1	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0049	6906	1	1	0	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	1/0	t0050	6907	1	0	0	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0051	6907	1	0	0	1	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0052	6906	1	0	0	1	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0053	6906	1	0	1	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0054	6909	1	1	0	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0055	6913	1	1	0	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0056	6910	1	1	0	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0057	6917	1	0	0	1	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0058	6901	1	0	1	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0059	6900	1	0	0	0	1	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0060	6900	1	0	0	1	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0061	6901	1	1	0	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0062	6901	1	0	0	0	0	1	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0063	6900	1	0	0	1	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0064	6901	1	0	0	0	1	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0065	6901	1	0	1	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0066	6900	1	0	1	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0067	6906	1	0	0	0	0	1	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0068	6900	1	0	1	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0069	6900	1	0	0	0	1	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0070	6907	1	0	0	0	0	1	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0071	6908	1	0	1	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0072	6907	1	0	0	0	0	1	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0073	6907	1	0	0	1	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0074	6906	1	0	0	1	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0075	6906	1	0	0	1	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0076	6906	1	0	0	1	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0077	6906	1	0	0	0	0	1	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0078	6906	1	0	0	0	0	1	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0079	6906	1	0	0	1	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	t0080	6906	1	0	0	0	0	1	copy fasta	ARPIN	chr15	89890006	89917952
ARPP19_chr15_52542045_52574030	0/0	t0001	5026	90	2	15	66	0	7	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/1	t0002	5030	75	6	15	34	8	11	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0003	5028	37	12	4	20	0	1	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0004	5029	32	12	0	15	0	5	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0005	5034	21	4	13	0	2	2	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0006	5029	13	10	1	2	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0007	5034	10	0	0	10	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0008	5030	10	0	8	0	1	1	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0009	5028	10	0	0	10	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	1/0	t0010	5028	9	8	0	0	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0011	5027	8	8	0	0	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0012	5028	7	7	0	0	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0013	5030	7	0	3	0	0	4	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0014	5031	6	6	0	0	0	0	copy fasta	ARPP19	chr15	52542045	52574030
ARPP19_chr15_52542045_52574030	0/0	t0015	5029	6	4	2	0	0	0	copy fasta	ARPP19	chr15	52542045	52574030