JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NSDHL_chrX_152826063_152874729	0/0	t0006	712	2	2	0	0	0	0	copy fasta	NSDHL	chrX	152826063	152874729
NSDHL_chrX_152826063_152874729	0/0	t0007	713	2	1	0	0	0	1	copy fasta	NSDHL	chrX	152826063	152874729
NSDHL_chrX_152826063_152874729	0/0	t0008	713	1	0	0	1	0	0	copy fasta	NSDHL	chrX	152826063	152874729
NSDHL_chrX_152826063_152874729	0/0	t0009	712	1	1	0	0	0	0	copy fasta	NSDHL	chrX	152826063	152874729
NSDHL_chrX_152826063_152874729	0/0	t0010	712	1	0	0	1	0	0	copy fasta	NSDHL	chrX	152826063	152874729
NSDHL_chrX_152826063_152874729	0/0	t0011	677	1	0	0	1	0	0	copy fasta	NSDHL	chrX	152826063	152874729
NSFL1C_chr20_1437166_1471849	0/0	t0001	1609	189	28	32	106	3	20	copy fasta	NSFL1C	chr20	1437166	1471849
NSFL1C_chr20_1437166_1471849	1/0	t0002	1609	124	23	18	57	6	19	copy fasta	NSFL1C	chr20	1437166	1471849
NSFL1C_chr20_1437166_1471849	0/1	t0003	1609	29	18	6	3	0	1	copy fasta	NSFL1C	chr20	1437166	1471849
NSFL1C_chr20_1437166_1471849	0/0	t0004	1609	11	6	3	0	1	1	copy fasta	NSFL1C	chr20	1437166	1471849
NSFL1C_chr20_1437166_1471849	0/0	t0005	1609	4	3	1	0	0	0	copy fasta	NSFL1C	chr20	1437166	1471849
NSFL1C_chr20_1437166_1471849	0/0	t0006	1609	3	3	0	0	0	0	copy fasta	NSFL1C	chr20	1437166	1471849
NSFL1C_chr20_1437166_1471849	0/0	t0007	1609	3	3	0	0	0	0	copy fasta	NSFL1C	chr20	1437166	1471849
NSFL1C_chr20_1437166_1471849	0/0	t0008	1609	2	0	0	2	0	0	copy fasta	NSFL1C	chr20	1437166	1471849
NSFL1C_chr20_1437166_1471849	0/0	t0009	1609	1	0	0	0	0	1	copy fasta	NSFL1C	chr20	1437166	1471849
NSFL1C_chr20_1437166_1471849	0/0	t0010	1609	1	1	0	0	0	0	copy fasta	NSFL1C	chr20	1437166	1471849
NSFL1C_chr20_1437166_1471849	0/0	t0011	1609	1	1	0	0	0	0	copy fasta	NSFL1C	chr20	1437166	1471849
NSFL1C_chr20_1437166_1471849	0/0	t0012	1609	1	1	0	0	0	0	copy fasta	NSFL1C	chr20	1437166	1471849
NSFL1C_chr20_1437166_1471849	0/0	t0013	1609	1	1	0	0	0	0	copy fasta	NSFL1C	chr20	1437166	1471849
NSFL1C_chr20_1437166_1471849	0/0	t0014	1609	1	1	0	0	0	0	copy fasta	NSFL1C	chr20	1437166	1471849
NSFL1C_chr20_1437166_1471849	0/0	t0015	1609	1	1	0	0	0	0	copy fasta	NSFL1C	chr20	1437166	1471849
NSF_chr17_46585669_46762464	0/1	t0001	1749	5	2	2	0	0	0	copy fasta	NSF	chr17	46585669	46762464
NSG1_chr4_4382102_4424058	0/0	t0001	1722	293	53	54	133	10	43	copy fasta	NSG1	chr4	4382102	4424058
NSG1_chr4_4382102_4424058	0/0	t0002	1724	26	3	10	10	2	1	copy fasta	NSG1	chr4	4382102	4424058
NSG1_chr4_4382102_4424058	0/1	t0003	1722	18	15	1	1	0	0	copy fasta	NSG1	chr4	4382102	4424058
NSG1_chr4_4382102_4424058	0/0	t0004	1722	10	5	0	3	2	0	copy fasta	NSG1	chr4	4382102	4424058
NSG1_chr4_4382102_4424058	0/0	t0005	1724	8	1	2	0	4	1	copy fasta	NSG1	chr4	4382102	4424058
NSG1_chr4_4382102_4424058	0/0	t0006	1722	7	7	0	0	0	0	copy fasta	NSG1	chr4	4382102	4424058
NSG1_chr4_4382102_4424058	0/0	t0007	1722	6	0	0	6	0	0	copy fasta	NSG1	chr4	4382102	4424058
NSG1_chr4_4382102_4424058	0/0	t0008	1722	4	3	1	0	0	0	copy fasta	NSG1	chr4	4382102	4424058
NSG1_chr4_4382102_4424058	0/0	t0009	1722	3	3	0	0	0	0	copy fasta	NSG1	chr4	4382102	4424058
NSG1_chr4_4382102_4424058	0/0	t0010	1722	3	0	0	3	0	0	copy fasta	NSG1	chr4	4382102	4424058
NSG1_chr4_4382102_4424058	0/0	t0011	1722	3	3	0	0	0	0	copy fasta	NSG1	chr4	4382102	4424058
NSG1_chr4_4382102_4424058	1/0	t0012	1722	2	1	0	0	0	0	copy fasta	NSG1	chr4	4382102	4424058
NSG1_chr4_4382102_4424058	0/0	t0013	1722	2	2	0	0	0	0	copy fasta	NSG1	chr4	4382102	4424058
NSG1_chr4_4382102_4424058	0/0	t0014	1724	1	0	1	0	0	0	copy fasta	NSG1	chr4	4382102	4424058
NSG1_chr4_4382102_4424058	0/0	t0015	1722	1	0	1	0	0	0	copy fasta	NSG1	chr4	4382102	4424058
NSG1_chr4_4382102_4424058	0/0	t0016	1722	1	0	0	1	0	0	copy fasta	NSG1	chr4	4382102	4424058
NSG1_chr4_4382102_4424058	0/0	t0017	1722	1	0	0	0	0	1	copy fasta	NSG1	chr4	4382102	4424058
NSG1_chr4_4382102_4424058	0/0	t0018	1722	1	0	0	1	0	0	copy fasta	NSG1	chr4	4382102	4424058
NSG1_chr4_4382102_4424058	0/0	t0019	1722	1	1	0	0	0	0	copy fasta	NSG1	chr4	4382102	4424058
NSG1_chr4_4382102_4424058	0/0	t0020	1722	1	1	0	0	0	0	copy fasta	NSG1	chr4	4382102	4424058
NSG1_chr4_4382102_4424058	0/0	t0021	1722	1	0	0	1	0	0	copy fasta	NSG1	chr4	4382102	4424058
NSG1_chr4_4382102_4424058	0/0	t0022	1722	1	0	0	1	0	0	copy fasta	NSG1	chr4	4382102	4424058
NSG2_chr5_174040706_174114179	1/1	t0001	1835	153	26	39	62	5	19	copy fasta	NSG2	chr5	174040706	174114179
NSG2_chr5_174040706_174114179	0/0	t0002	1835	40	21	11	0	1	7	copy fasta	NSG2	chr5	174040706	174114179
NSG2_chr5_174040706_174114179	0/0	t0003	1833	39	9	7	16	2	5	copy fasta	NSG2	chr5	174040706	174114179
NSG2_chr5_174040706_174114179	0/0	t0004	1835	24	18	3	1	0	2	copy fasta	NSG2	chr5	174040706	174114179
NSG2_chr5_174040706_174114179	0/0	t0005	1833	5	5	0	0	0	0	copy fasta	NSG2	chr5	174040706	174114179
NSG2_chr5_174040706_174114179	0/0	t0006	1835	5	2	1	0	0	2	copy fasta	NSG2	chr5	174040706	174114179