JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NSG2_chr5_174040706_174114179	0/0	t0007	1835	3	0	1	0	1	1	copy fasta	NSG2	chr5	174040706	174114179
NSG2_chr5_174040706_174114179	0/0	t0008	1835	3	0	0	0	1	2	copy fasta	NSG2	chr5	174040706	174114179
NSG2_chr5_174040706_174114179	0/0	t0009	1833	3	2	1	0	0	0	copy fasta	NSG2	chr5	174040706	174114179
NSG2_chr5_174040706_174114179	0/0	t0010	1835	3	0	0	3	0	0	copy fasta	NSG2	chr5	174040706	174114179
NSG2_chr5_174040706_174114179	0/0	t0011	1835	2	2	0	0	0	0	copy fasta	NSG2	chr5	174040706	174114179
NSG2_chr5_174040706_174114179	0/0	t0012	1833	1	0	0	1	0	0	copy fasta	NSG2	chr5	174040706	174114179
NSG2_chr5_174040706_174114179	0/0	t0013	1835	1	1	0	0	0	0	copy fasta	NSG2	chr5	174040706	174114179
NSG2_chr5_174040706_174114179	0/0	t0014	1835	1	0	0	1	0	0	copy fasta	NSG2	chr5	174040706	174114179
NSG2_chr5_174040706_174114179	0/0	t0015	1835	1	1	0	0	0	0	copy fasta	NSG2	chr5	174040706	174114179
NSG2_chr5_174040706_174114179	0/0	t0016	1835	1	0	0	1	0	0	copy fasta	NSG2	chr5	174040706	174114179
NSG2_chr5_174040706_174114179	0/0	t0017	1835	1	1	0	0	0	0	copy fasta	NSG2	chr5	174040706	174114179
NSG2_chr5_174040706_174114179	0/0	t0018	1835	1	0	0	0	0	1	copy fasta	NSG2	chr5	174040706	174114179
NSG2_chr5_174040706_174114179	0/0	t0019	1835	1	1	0	0	0	0	copy fasta	NSG2	chr5	174040706	174114179
NSG2_chr5_174040706_174114179	0/0	t0020	1835	1	1	0	0	0	0	copy fasta	NSG2	chr5	174040706	174114179
NSG2_chr5_174040706_174114179	0/0	t0021	1835	1	0	0	0	0	1	copy fasta	NSG2	chr5	174040706	174114179
NSG2_chr5_174040706_174114179	0/0	t0022	1835	1	0	0	1	0	0	copy fasta	NSG2	chr5	174040706	174114179
NSG2_chr5_174040706_174114179	0/0	t0023	1833	1	1	0	0	0	0	copy fasta	NSG2	chr5	174040706	174114179
NSG2_chr5_174040706_174114179	0/0	t0024	1835	1	1	0	0	0	0	copy fasta	NSG2	chr5	174040706	174114179
NSG2_chr5_174040706_174114179	0/0	t0025	1835	1	0	1	0	0	0	copy fasta	NSG2	chr5	174040706	174114179
NSL1_chr1_212721153_212796777	0/0	t0001	12271	38	0	16	21	0	1	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0002	12264	29	0	2	23	2	2	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	1/0	t0003	12270	27	5	2	14	1	4	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0004	12269	26	7	3	12	0	4	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0005	12264	15	0	1	14	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0006	12272	12	0	1	10	0	1	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0007	12269	11	9	2	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0008	12265	10	0	1	6	1	2	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0009	12270	8	7	1	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0010	12271	7	0	1	5	0	1	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0011	12270	7	0	3	3	0	1	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0012	12275	6	1	2	3	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0013	12265	5	1	3	0	1	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0014	12254	5	5	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0015	12270	4	0	0	3	0	1	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0016	12271	4	0	1	0	3	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0017	12270	4	4	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/1	t0018	12272	4	0	1	1	1	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0019	12272	4	0	0	0	0	4	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0020	12268	3	0	0	3	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0021	12270	3	3	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0022	12271	3	3	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0023	12270	3	0	0	3	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0024	12271	3	0	0	3	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0025	12270	3	3	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0026	12264	3	0	0	3	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0027	12271	2	1	1	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0028	12268	2	0	1	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0029	12268	2	0	0	2	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0030	12270	2	0	1	0	0	1	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0031	12268	2	1	1	0	0	0	copy fasta	NSL1	chr1	212721153	212796777