JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NSL1_chr1_212721153_212796777	0/0	t0032	12269	2	2	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0033	12273	2	0	0	1	0	1	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0034	12269	2	2	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0035	12272	2	2	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0036	12271	2	0	0	2	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0037	12272	2	0	0	2	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0038	12273	2	0	2	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0039	12261	2	2	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0040	12264	2	0	1	0	1	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0041	12264	2	0	0	2	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0042	12266	2	0	0	2	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0043	12265	2	0	1	0	0	1	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0044	12266	2	0	0	1	0	1	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0045	12265	2	0	0	2	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0046	12270	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0047	12266	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0048	12270	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0049	12269	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0050	12268	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0051	12269	1	0	1	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0052	12270	1	0	0	0	0	1	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0053	12270	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0054	12270	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0055	12266	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0056	12269	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0057	12269	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0058	12268	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0059	12269	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0060	12268	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0061	12269	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0062	12271	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0063	12273	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0064	12271	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0065	12270	1	0	1	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0066	12274	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0067	12267	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0068	12269	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0069	12274	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0070	12271	1	0	1	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0071	12270	1	0	0	0	1	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0072	12272	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0073	12270	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0074	12269	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0075	12271	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0076	12272	1	0	0	0	0	1	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0077	12270	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0078	12271	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0079	12270	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0080	12268	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0081	12269	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777