JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NSL1_chr1_212721153_212796777	0/0	t0082	12269	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0083	12272	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0084	12268	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0085	12271	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0086	12270	1	0	1	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0087	12271	1	0	0	0	0	1	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0088	12271	1	0	0	0	0	1	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0089	12272	1	0	1	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0090	12272	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0091	12273	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0092	12271	1	0	1	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0093	12269	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0094	12270	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0095	12272	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0096	12271	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0097	12271	1	0	0	0	0	1	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0098	12267	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0099	12272	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0100	12273	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0101	12272	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0102	12269	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0103	12271	1	0	1	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0104	12265	1	0	0	0	0	1	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0105	12263	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0106	12265	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0107	12265	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0108	12266	1	0	0	0	0	1	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0109	12264	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0110	12264	1	0	0	0	1	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0111	12264	1	0	1	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0112	12264	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0113	12264	1	0	1	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0114	12266	1	0	1	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0115	12266	1	0	0	0	0	1	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0116	12267	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0117	12268	1	0	0	0	0	1	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0118	12264	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0119	12265	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0120	12263	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0121	12264	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0122	12273	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0123	12278	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	t0124	12272	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSMAF_chr8_58578508_58664853	1/0	t0001	821	240	56	38	117	8	20	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/1	t0002	821	77	8	12	38	6	12	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	t0003	821	15	14	1	0	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	t0004	821	12	0	0	12	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	t0005	821	5	0	0	5	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	t0006	821	4	3	1	0	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	t0007	821	3	0	0	3	0	0	copy fasta	NSMAF	chr8	58578508	58664853